RNA id: XM_039796036.1


Basic Information

Item Value
RNA id XM_039796036.1
length 4499
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC120556426
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 5733290 ~ 5758249 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCCCTCCACTACAGCTTCATAAACACCACAGCGTTTGGCTCGGTGTGCCAGTGCAGCTGCTGACTCCTACTGGAGCTACCGGAGTCTTCTACAGCTCGGAGAGACTGTCTTCCTTCTGGAGAACTAACTCAAGAAACAGGCATGCACGCCAACAAGTGTGGAGACCAGGGGTCACACAGAGGAAAGGCTTTTGACTCAGCAAACCGTGCTAATGAGGAGAAGCAGATCAGCAATGAAGTTACATTCAGTAAATGTGATGAGAACCTGGAAAACAGGAGCGTCTCCGCTGGAAGGCCCACCAGCTCAGAGAAAAGGGTTGCGACTATCATTTTCTCCCTGAAAAATGAAGTCGGTGGTCTCGTCAAAGCACTCAGGCTTTTCCAGgAAAAACACGTCAACCTTATTCATATTGAGTCCCGCAAGTCCCAACGAAGGAATTCAGACTTTGAGATCTTTGTGGATTGTGACACTGACCATGAACAGCTCAAGGAGCTGACTCAGCTGCTGAGGAAGCATACTGATATTGTTGAGATTACTCCATGTGAGGACTCCACTTTACCTGATGATGATATGGCCAGTGTGCCCTGGTTCCCTAAGAAGATCTCTGATTTGGATCTGTCTTCCAACAGGGTTCTGATGTACGGCTCTGAATTAGATGCCGATCATCCGGGATTTCAAGACAACATTTACcgtaaaagaagaaaatattttgctgatttggCTATGAGCTACAAAATTGGCGATCCTATTCTCCGTATCGACTTCACAACTGAGGAGGTGCGTACCTGGGGCGTGGTGTTCAGGGAGCTCAACAAGCTGTACCCCAGCCACGCCTGCAGGGAGTATCTGAACAACCTCCCTCTGCTGACCAAACACTGTAACTACAGCCAGGACAACATCCCCCAGCTGGAGGACGTCTCACACTTCCTCAAGGagcgCTCAGGCTTCATCATTCGGCCAGTAGCAGGGTACCTCTCCCCCAGAGACTTTCTAGCGGGTCTGGCCTTCAGAGTATTCCACTGCACTCAGTATGTCCGCCACAGCTCCGAGCCTTTGTATACACCTGAACCAGACACATGCCATGAGCTGCTGGGACACGTTCCTCTGCTTGCTGAGCCCAGCTTCGCCCAGTTCTCTCAAGAAATTGGTTTAGCATCGCTGGGAGCTTCAGATGATGCTGTACAGAAACTGGCCACgTGTTATTTCTTCACAGTGGAGTTTGGTCTATGTAAGCAGGATGGCAGGCTCAGGGCCTATGGAGCTGGACTCCTCTCCTCCATCAGTGAACTCCAGCATGCTTTGTCTGGCAAGGCCAATATCCTTCCGTTTGACCCCGTGGTGACCTGTAACCAGGAGTGCAAAATAACTACGTTCCAAGACGTTTACTTTGTTTCCGAGAGCTTTGAGGAAGCCAAGAACAAAATGAGGGAGTTTGCAAAGACCATTTGGCGTCCATTCACGGTACGCTACGACCCGTACACCCAGAGCGTGGACGTCCTGAAGGACACCAACAGCATCAATGACATGGTGAAAGACATCCGGCATGAGCTGGACATTGTAGAAGACGCCCTGAACCGACTCAACAAAGACCTGAGAGTCTGAGGGTCAGAAGAGGCTAGCTGGGGTTGAAAGGTTTGGGTGGGGACCAGTGGGTTGGGGCTGGGTATACATACCTAGGTGGGAGATTAGATGGTGATGGGGGGTTGGTGAGAATGGGTTTCACGAAACTAGGATACTGACCTTAATCCAAGAGGGATAGTTAGACTAAGCTGTAGTGATTCGATTATCTTGAGTAAAGTTATAATCATACAGCTCTCAGTGCCTCCTTCATGGGACAGGCCTGTAAGCTGCAGAGTGCACTTGGCCTCAAGTTAGCCTTACGCTCTCAAATCGCGTTTTTCTGTACTTACACTTGCTATTTTGAGTACATAGTGTGGTTACGCTGACGAAGTATGGCCAAATGCAGCGCACTATAAGTAACCGAATGCGGCACTTGAAACGGTGAAAACATTCAGTGTGGAATGCTGGAcactagggctgttggaacaaatACCGAAattcgaatataattcgaatagtaaaaaaaaacaatactattcgaatgctaaaattactatttgaatgtgacttttttttataaatatgtcagctaactttagctaatctccctcttctcaccTTGGCCTACCCGCATGTGTCACTCATGTCACGTCTTATGAAAAATAACttagcgggagtgagaaacacaaggcattgtgaggtctAAGGTAAGTACAACATTGCGGAGCTAACTTTACATacagagtaacgttagtacatggggagtgacaggctgcggctggaaatcgtAACGAGgacgggaaatagttttaacatgactttgaaATCGACCTCCACCGAGCCAAAGTTCTTATGTTGACATTAGTTAGCTCAttcttgttttctaactgcgtCGCAAGGTTTAGTAACAttagcttagctgggagcttcatggagaaagctaaagtttatgttagctgccctacagctgtcagagttactTCGACTTCATAGATTACAGTCtaatagctgtattctcagtaatgtgacaatctgcaagaaacaggttgcttataaatcactaaaatagtagtgacagcaccgtttggcttgGTTATTAATGCAGTTAGCATCGTTTGTTACTTacctagtttatgacaaatcgttTCGGCTGTCATCATTGTGCAACCGACCACCGTTAGCTTTaacaacagagccgcttcactacacttgttagataatgtttcattacagagttctctgttgatttgtgtttgtcgctggAAAATTAACGTAAACAAAGTTGCGTGCAGGTCCCCTCAAGGCCAGGCTAATgttagaagtccctctagtggacagaatgtgtaacaacaaccacatgcttgtagtggcattgacaatgcataagcctgagtatattatttaacaggctgcaattgagcattaaatatttgaatattattagaatataaaaaaatatcaaatggaATTGattgtattaaatgtattatagaggaagattgacagcttaCTGGACACTACTCTCGATCACTGGTCTACATAGCAACAGCTATGGGACCACCAATGTATTTTCAATATGTGACGGGCGAGGAAGGTGCAGTGGTTGTGAtttgaaacagagaaaaccGAACTTTACAAAGTTTTatcattgatttttatttttttttattacaacgTCATCATTTTACAACTCAAATCCATACACAATACAGgttgcaaaaaaacattttgattcaGCCTATCCCTCTACCCTTATCCCTTACCCCTTACACTACCCCCATCCCTCCCTCCACCTTCTTCCTTATGCCCCCAGCTCCCCTCCTTCCCTCCACCAACCACCATAATGATAATATCCACTCAAGGATATCATTCTTATCTAGTTAGAAGATCTTTTAACTTAGATATCAAATCTGTCAACATTGAAATCGTATCTGGTTGTGCATCATTGACTTGTGCTGAAGATAGTTCCAGGTaagaaatgtccaaaaaaaactcCAAGTCAGTGAGTACTTGAAATATCATATGAGGAGGGTTCCAACGTTGGAATATAATCATCTTGGCTGCAGTCAAGCCTGTTAGCCAGAGTTTGCGAGGTTTTTatacaaatgtaatttatacattgttgtgtgcCAATGAGGCAGTAATGCTCCACCTGGCTGCAATTTACCATTAAAAAAGAATGTGGAGAATAATTTCCAGTAAGTGCATAACAGCCGTGTTGAGACAACCCTACCCTGTCAAATGTTACTCACTACAAGTGAGTACATAGTGAACACAGTGTActgcatgtaaatgtactcaCAGAAGTATCCAAATTGAGACACACTTTGGTGTGGCAAGAAGgttcaatgttcaatgttcaatttatttataaagcacatattaatacaacaaaagttgaccacagtgctgtacaaaaaatacaataaaacaatcTTCAAGACAATTAAATTCCACTAGTAAATACTACTAAAATCCTATCACATCATTAACACAGCACTCATAGATAGAGGTTGGGACGGTATTTGGGGGGAGCTATGCTAAAACCTTGATAAAGTCACTAATCTCCACGTatttatggaataaaaaaaaaatctaacaaagTCCATCATTTAAGGGAATTACAGCCGGTCGATCCATAGTGTAAGTGTAACAAGTAATGTGAGTGCATAATTCTCTGATTGATTTCTATGGTCAAATATGACCATAACAATGCAGGAAATGTGGAGTGATAATGTCTTGCCTAAATGGGTAACTACAGTAGTTACTGTTGTAATTTATGTGATAGAATTTGAATAAATGTataataaagttaaaaataataaattaacatCAAAATCCTAATTTTGTTGCCACAATGTAGAAGTTAATGTCTAATGCTAAGCCAATTGACACTGTAAAGATGGATCCTGGTATTAAATGTTTCTGCTGACCGCT

Function

GO:

id name namespace
GO:0042427 serotonin biosynthetic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005506 iron ion binding molecular_function
GO:0004510 tryptophan 5-monooxygenase activity molecular_function
GO:0016597 amino acid binding molecular_function

KEGG:

id description
K00502 TPH1_2; tryptophan 5-monooxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34365 lncRNA upstream 57302 5674366 ~ 5675988 (+) True G25611
TU34339 lncRNA upstream 100260 5630664 ~ 5633030 (+) True G25593
TU34302 lncRNA upstream 842294 4890727 ~ 4890996 (+) True G25567
TU34285 lncRNA upstream 896023 4836611 ~ 4837267 (+) False tshz3b
TU34276 lncRNA upstream 1050820 4682124 ~ 4682470 (+) True G25541
TU34421 lncRNA downstream 104410 5862659 ~ 5862867 (+) True G25663
TU34433 lncRNA downstream 134472 5892721 ~ 5893025 (+) True G25673
TU34435 lncRNA downstream 152980 5911229 ~ 5912453 (+) True G25675
TU34492 lncRNA downstream 277207 6035456 ~ 6035789 (+) True G25709
TU34494 lncRNA downstream 278610 6036859 ~ 6037969 (+) True G25710
XM_039794571.1 mRNA upstream 61267 5659480 ~ 5672023 (+) False LOC120555666
XM_039794570.1 mRNA upstream 61267 5663719 ~ 5672023 (+) True LOC120555666
XM_039794564.1 mRNA upstream 79035 5642283 ~ 5654255 (+) False zgc:162297
XM_039794566.1 mRNA upstream 79035 5642555 ~ 5654255 (+) False zgc:162297
XM_039794563.1 mRNA upstream 79035 5643148 ~ 5654255 (+) True zgc:162297
XM_039796037.1 mRNA downstream 6294 5764543 ~ 5804822 (+) True LOC120556427
XM_039795269.1 mRNA downstream 57785 5816034 ~ 5854489 (+) True LOC120555999
XM_039795538.1 mRNA downstream 110806 5869055 ~ 5884023 (+) True zgc:153993
XM_039795087.1 mRNA downstream 159307 5917556 ~ 6021420 (+) False ano1a
XM_039795081.1 mRNA downstream 159324 5917573 ~ 6021420 (+) False ano1a
TU34243 other upstream 1157645 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 1947748 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 3649971 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 3890479 1839333 ~ 1842811 (+) True G25173
TU34491 other downstream 275960 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 293638 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 294566 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 506725 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 528799 6287048 ~ 6288077 (+) True G25743

Expression Profile