RNA id: XM_039796037.1


Basic Information

Item Value
RNA id XM_039796037.1
length 2202
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC120556427
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 5764543 ~ 5804822 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgagggagggaggagttGGGTGTTGCCTCTGTCTCCAAACTGAACTAGTCAGGATTCCCAGTCGAGACTCAGCCCCGTTATACCCGCCGCGACACCTGGCCTGCTGCCGCCGTCCTGTGAACTCTGCACCGAATACATTTGACTAACCTTAACCGACCACAATGGGAGTCGAAGGCTGCACCAAATGCATCAAGTACATGCTTTTCTTCTTCAACTTCATCTTCTGGcttGCAGGAGGTGTTATCCTGGGCGTGGCCCTGTGGTTGAGACACGACCCCAAGACCAGCAACCTGCTGGATTTGGAATTAGATGGAGCCCATGCCCCCAGCACCTTCTACATCAGTGTCCACATCCTGATCGCTGTCGGCGCGGTGATGATGGTGGTCGGTTTCCTCGGTTGCTATGGTGCCATCCAAGAGTCCCAGTGTCTATTGGGAACTTTCTTCGCCTGCCTGGTCATCCTGTTCGCCTGTGAAGTTGCAGCTGGAATCTGGGGCTTCATGCACAAAGACACAGTGTCGAAGGAGATGATCAACTACTACGACTCTGTGTACGAGAAGGCCGTGGCACAAAGCCTCACTGACAAGGACAAGAAGACGGCTGCCGCCTCCGTGCTCAAGGTCTTCCATGAGACGCTGAGCTGCTGCGGTAAAGGCCAGGGCACGTCCTTTTTCACACAGCTCACAGACGTACTGGGCCTGACTGAACTCTGCCCCAGCGCTGGAACTACAGTTGATTGCCACAAGAGGATCGATGAACTGTTCACAGATAAGATCTACCTGATTGGTATCGCCGCTCTGGTGGTTGCAGTTATTATGATCTTCGAGATGATCTTCAGCATGGTGTTGTGCTGCGGGATCCGCAACAGCCCGGTGTACTAAAGCGACGCTCGCCAAATGAAGGAAGGACGAcgtctccgtctccgtctctttctttttttcttttctttttcttttataagcAGGAACACGTCACATATATTGCTTGCTGGATTTAGTCAGCTCTTTGAGAAGACCAACGTAAAAACCATCCTCCAttgagcatttctttttttttttttttatattacaacTGTCAATTCTTTTGTTTCGTTAGTCACAGATGCTGTTATGCATATTTGACCAGTGCTATCCTAACCTGATATGTAGATATTATATCACACGGTCACACATGAATGCCATTCACCAGTTGGTGCTCTAATCCTTTAGTGACGCATTAGTTGTTTTACTGCTCCCTTTGCCTATGaacatgtatttttatttttatttttcactgtttgatgtataaactgtatataaatatatatattaacagtGCTTTATGACTGCCTAAGCATGAAAATTGTATTACAGTAGGTCTTTCTCCTGTATTCTTCCTGCACTCTCTGCTTGTTTGTCTTTGCTCTAGACTGAACCAGATGATGGCGTCCCCTGCCCCACAGACCATTGTCTCGGGTTTTCAcccacactgctgtgggatgtcTGTCGAACAAAAGGAATCTCAGTTAATCTCGGAAGCTGGAACCAAAGTCAAAGTGACCAGATGTCCGTCACGTTGGCCCCCATGGAgttattttgttggtttgtcttTGGCTGTTTGTCGTTCATCGTGTCTCCAACGCTGTCTTGAGCGCTCAGTTGTATAAAACCTATGAGGAAGGTGTTTCCCCTCAGTAGTGTTCTTTAAGATTTCCTTGGacaaaaatgaagttgcataacgTTGAATTAAGGACAGCCGcgacgattaatcgattagtggTCAACTGTCAAATTAATCCCCAACTCTTTTGATAATTCATCGTTTTGAGTCATTCTTTCATGAAAAAAGAAAGTCACAGTTCTCTGATCGCAGCGTCTTAAaagtgaatatgttctagttttcttctctcctctgtgacagtaaactgaacatctctgagttgtggacaaagcGAGagatttgaggacgtcatcttgggcttcaggaaacaacatttttcaccattttaaagaccaaacaactaattgagaaaataatcaacagctgCAGCCCTAGAAATAAGTAATGGTCTTATAAACCATACTTTATATTCatctaaaaacacacaaatgtctCTAGGCTATTTTGGCATAGTTCCACCACCTACATCTCGTATTTTGTCAAAAAATGTTCAATTGGGTGGTTAAAACGCAAAAAAGGCAGCACTATTCATTCTGAATATT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06508 CD81, TAPA1, TSPAN28; CD81 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34365 lncRNA upstream 88555 5674366 ~ 5675988 (+) True G25611
TU34339 lncRNA upstream 131513 5630664 ~ 5633030 (+) True G25593
TU34302 lncRNA upstream 873547 4890727 ~ 4890996 (+) True G25567
TU34285 lncRNA upstream 927276 4836611 ~ 4837267 (+) False tshz3b
TU34276 lncRNA upstream 1082073 4682124 ~ 4682470 (+) True G25541
TU34421 lncRNA downstream 57837 5862659 ~ 5862867 (+) True G25663
TU34433 lncRNA downstream 87899 5892721 ~ 5893025 (+) True G25673
TU34435 lncRNA downstream 106407 5911229 ~ 5912453 (+) True G25675
TU34492 lncRNA downstream 230634 6035456 ~ 6035789 (+) True G25709
TU34494 lncRNA downstream 232037 6036859 ~ 6037969 (+) True G25710
XM_039796036.1 mRNA upstream 6294 5733290 ~ 5758249 (+) True LOC120556426
XM_039794571.1 mRNA upstream 92520 5659480 ~ 5672023 (+) False LOC120555666
XM_039794570.1 mRNA upstream 92520 5663719 ~ 5672023 (+) True LOC120555666
XM_039794566.1 mRNA upstream 110288 5642555 ~ 5654255 (+) False zgc:162297
XM_039795269.1 mRNA downstream 11212 5816034 ~ 5854489 (+) True LOC120555999
XM_039795538.1 mRNA downstream 64233 5869055 ~ 5884023 (+) True zgc:153993
XM_039795087.1 mRNA downstream 112734 5917556 ~ 6021420 (+) False ano1a
XM_039795081.1 mRNA downstream 112751 5917573 ~ 6021420 (+) False ano1a
XM_039795080.1 mRNA downstream 113933 5918755 ~ 6021420 (+) True ano1a
TU34243 other upstream 1188898 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 1979001 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 3681224 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 3921732 1839333 ~ 1842811 (+) True G25173
TU34491 other downstream 229387 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 247065 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 247993 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 460152 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 482226 6287048 ~ 6288077 (+) True G25743

Expression Profile