RNA id: XM_039796040.1


Basic Information

Item Value
RNA id XM_039796040.1
length 3242
RNA type mRNA
GC content 0.42
exon number 5
gene id ccsapb
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 30654191 ~ 30659961 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATatttactgtaggcctacatataTTTAGACTCTTCAGCCCTGAATTTCTGCTGTCAAGCCTTGCACTGTTATAGATGAGAGTCGATGGATTGTCAGTGAGATTTCACGTTTAGGCTATTTTCTGCGAGCGCTGACAGGCGATTATCGGTGCTCCATGTTACCATATGATTAACAGACATCTATAAATAACAGGAGACAATATGGAGCAACGGGCAAATGTTTAACCAGTAGCCAGATATTATCACTAATACGGTGTTATAGGCTGATGTCCTAGACGACGATTTAATACACGCTTATTTTAAAGCCTTTGATTCCAAAATATCGTATTTCAGCAATAAGGAAATCGGGTTGTGATGATTTATAGCACAACAGGTATAAAGCTTGGAGTGCTTTCATACAGTGATTACGGCTAACCTTTAATTTGGAATATTCAACAGTCGTGCCTGGAGCCAATCAGATGACGAGATGTCACCTACGTCATCGCGTTCAAGAAACGTCTGCTTTTAGCGGCCGAATTCAAAATTAATTCAgccaattttatttttgttatagtAAAACGGCGATTGAATTTACAGAGGGAACGTCCCAGTTGTTCAACATGGCGATCAAGAGGATCCGCTCGGAGTACATGAAGAAATTCAAAGACCCCAAATGGGAGACCTACACTAAGTGTTATGAGGAGATGCTGAAGTACAGGCTGACCCGCAGGCTGCTGGAGCAAACACACAACCCCTGGTTCTGGAGTGGCCCAGACAGTGATTCAGAGTCTGGAGAAAGAAGCCCCCCTCCTCCCAGCAAGAACCAGGCAGGGTCCGAGACCAGCAGAGACAGGATGGAGCCTGAGCTGGAGGAGTGTGAGGGGGCGAGGGTGGACagacagcaggagcagcagcagggcAGACCCATGCGGTCGGTACCCAGGCTTCCCATCCAAGAAGAGGAGAATGTGTCTGCTCGACAGTCTGCAGTCCATGGCGCACAGGTTGAAGGTGCCAAAGAGACAGGAGTactagaggaggagagagaggagcagcagACTCACAGGGAACAAGACAGAGCGAGAGACACTGGAGGATCCCGACTACAGCAAAGTAAACCCTCCAAATCCTCAAAGCAAACATGGCGCTCCCAGCGGGTCAGACCTGCACCCACACGGCAGCCCGGGGATGACGGTAAGGAGAGCAGGCATCCGTTTGCTCTGTACGCTTCAGGAGAGAAGAATTCAAACATGGCAAGCAAGAAGACCCACAATGTTGGCCCTGCAGCTTCGACTACTGAGATCCATGAGTCGGCTCTTCGTGCAAAGACCAGGCGGGAAGTGGAGCACCAGATCCAGACCCAGAAGACCGAGCGCCGGAGAGCCAAGTCTGCCGATCTGGACAAGGCCAGAAAGTTGGTTCAACCAGAATTCAACCCCTGGCTCACTGAGTACATGCGCTCCTTCTCAGCTCGCTCCCgataggacacacacacgcacactctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtagaaaTACTTACATCAGGTGTGATTCCAGACAAAACATAAAGCCATTATTGCCTTCCACCACTGAAGTTTAAATACCCATAGATGTAAAATAGAGCATGGGGTGGATTGATTTATACAAACGATCCAAAATTTGTGTCACTCTCACATTCAGGGTGTAAACTGATACAACTTTGAAATACACTGTGTGGCTTATTCCCCCAGATGTGTACTGTCATGTTTTTAATACATACAATAAGAATCATTTTACAGAGTATAAGATACTCTTGAAAGTAAATGTATAATAAATAGATTCATCTACCACATACAGATATTTTGATTAGAATGAAGAAGCATTTTACAGCCATACTTTGATGCAGTCCCTTTAAACATACAGCTATGTAAAatgtgtccatgtttttttatacaGGGATATCAAACCATAGTGGACTCACACAGGAGTTATGAAAACACATGGCAGCATGTCTGATTAGACCCagccacatttttcaaaacacatgAAATGTGAGACCACAAACATGAAGAATACACTTATTGTATTCACATATTAACAAAACCAAACAGTCAAAATGTTTGTATTCCACAAAGTTCTGCTAAGCACAGCAAGATGGCTCAACCAACTGAAAGTTTTTCTTAAATGTATGCAGCTTTACAGTACAAAGTATTGATTGTCTGACAGAAAtacctctgtctgtttgtttaagATTTTTACAGCTTTTGATTTTCAGATCACTTAGCGCTGTGAACTGGTTCTTGTAGATTGAATGGTTTGTTGAACGGTTAATGGACTGAGCCTCACTGACTTGGTTTAGATGAAGAGGGAATCACACTCCGtacacacagtcaaacacacCTCTGTGTAAAATCACAGTTGTGTGATGTGGCACATTTTCCGCAACGAGGGCTCGGGTGAACAGCCAGACATCGACTGGCAAGtgaacagacatttatttcaaCCCCAAAGTACTTctcaaaaataaatgtgttaatgTAATCAATTAACCTGGTGAGATTGCAGTGTGaaaatagatgtgtgtgtgtgtgacttttaaAGCCATTGGATGACTGTGAAATGTATTTCTGTTAAACATTCACTGGCCATGGGACTCTTTCCACCATAACATGTAACATGAATTATGACGTACAGCTAATGTAGTTTCTTTTGTTGaggtaaacatttatttatcattACTGTCACTGAATATGCTTTAGAACCAAAAGAGGAACCATAATAACAATGGACATTAAGCTGACGCCTAAATGAAATACATGAGTACATATTGCTGATTTACTGCTTACTTGTTAAAGTAGCATACACTCTGAAGCAGGACCAAATCAATATGCACTTTGATAATTAGTCACCTTTCTGAAATAATATTTGACCAGAATACCTGGCTACCGATTtagattgtttattttttgaatctgtgtatatttgtttgtatgtgtgtagttGTATGTTTGTAACATCAGACATTGTTATTTGTAATTACACAAGAAGACAAAAATGGACTTTGAATCCTTTGTGCAATGGATCTGCCTGTCTTTTCATCATCCAAACCAAGATCAATCAGATCCCTCTTGAGTTCCTTGTGTCAGTTATCATGATAAAATCATTTCTGTGCCATGAA

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0048513 animal organ development biological_process
GO:0048523 negative regulation of cellular process biological_process
GO:0007399 nervous system development biological_process

KEGG:

id description
K16454 CCSAP; centriole, cilia and spindle-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41361 lncRNA downstream 68735 30569887 ~ 30585456 (-) False G31110
TU41360 lncRNA downstream 68735 30583336 ~ 30585456 (-) True G31110
TU41366 lncRNA downstream 74887 30578286 ~ 30579304 (-) True G31115
TU41220 lncRNA downstream 229868 30421690 ~ 30424323 (-) True G31027
TU41405 lncRNA upstream 39553 30699403 ~ 30726354 (-) True G31146
TU41409 lncRNA upstream 109733 30769583 ~ 30769809 (-) True G31150
TU41416 lncRNA upstream 122560 30782410 ~ 30785228 (-) True G31155
TU41568 lncRNA upstream 381698 31041548 ~ 31050491 (-) True G31274
TU41572 lncRNA upstream 442958 31102808 ~ 31103063 (-) True G31278
XM_039794795.1 mRNA downstream 8166 30635173 ~ 30646025 (-) True phf10
XM_039794794.1 mRNA downstream 19552 30631711 ~ 30634639 (-) True psmb1
XM_039794791.1 mRNA downstream 26866 30618859 ~ 30627325 (-) True LOC120555751
XM_039794792.1 mRNA downstream 28119 30618857 ~ 30626072 (-) False LOC120555751
XM_039794793.1 mRNA downstream 43233 30606647 ~ 30610958 (-) True rhoua
XM_039794904.1 mRNA upstream 1336 30661186 ~ 30665260 (-) True acta1b
XM_039794902.1 mRNA upstream 10029 30669879 ~ 30685199 (-) True abcb10
XM_039794102.1 mRNA upstream 155546 30815396 ~ 30827693 (-) False LOC120555418
XM_039794101.1 mRNA upstream 155546 30815396 ~ 30827693 (-) True LOC120555418
XM_039794024.1 mRNA upstream 195324 30855174 ~ 30867292 (-) True adpgk2
TU41279 other downstream 122075 30530751 ~ 30532116 (-) False fam120b
XR_005638738.1 other downstream 1192955 29402754 ~ 29461236 (-) False elp4
TU40901 other downstream 1385027 29257978 ~ 29269164 (-) False LOC120555471
XR_005638769.1 other downstream 1807226 28770001 ~ 28846965 (-) True mafa
TU41994 other upstream 2231649 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 2682397 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 2778613 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 3147086 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other upstream 3147086 33806936 ~ 33816370 (-) False LOC120555494

Expression Profile