RNA id: XM_039796055.1


Basic Information

Item Value
RNA id XM_039796055.1
length 3459
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC120556440
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1378010 ~ 1385075 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGCATCATCAAAATCATCATCCATCACCTCCTCtctcggtgtgtttgtgtgtgtgtctctctctctgttccctcCGTTGTCTTTTTAATGTAGCCTAACTTCTGACTGATCGGGAGAGCAGGGAGCGTCTGGAAAGCCTGGTCCATCCCTGATGAAGGATCTGATCGCACGGTGTTCTGTTTAAAGCTGGACACACATGCAGGACAGAAAGGATCAGATTGTATATTTTTGAGGATAACGTTGCATTCCTCCGTGGATTTGGGCTCAGTGttgtctgtatttattgttcccCTTCTGTGGATGTTATGCATTATGTCGGTCTGAATGAATCTTTCTTTTTTGGATTTCCACCGCGCCGAAGCTATTTCTGGGGGACCATTCTTCACGTGAAGTCGCGCGATATATTTAGCATAAATTGCCGTTATCTTATGAGTTCTAGTCATATTTTCAGGCGTAGGCTAACTTGTATTCGATTTTGTCAAACAATGCCGCAGTTTTCTTGAATGTGTTAGCAATACATGCAGACAAATAGGCTAGTGTGTTAATTATCGCGGACAAATAGGAAAGTTGGGCGCTCAAAGTTTTGGAGACTATCGATATGGCTATGGTGGCGTGGAGAAACCCCGAGGGCGTCGGGGACACTCAGGGGACCCTCTCCTCATCGGTGTCCCAGGTCGCACCTCTGTCTCTGCCTGGGGACCTGACGGGACACATGAACCCGGCGTCTTCTCTGGAAATACcgccggcagcagcagcagcagcacccccGGGCGCACCGCCGCCCAATCCATCCAGCAGCACCACCACGAGCACCACcatcaataacaacaacacctcctcttcctcgtcctCTTCCTCGTCCATGGACAAACAGCAGAGCCAGCAGATCGAGTGCATCGTGTGCGGGGATAAATCCAGCGGGAAGCACTACGGACAGTTCACATGTGAAGGATGTAAGAGCTTCTTTAAACGCAGCGTCAGGAGAAACCTGTCCTACACCTGCAGGGCCAACAGGAACTGTCCCGTTGACCAGCACCACCGCAACCAGTGCCAGTACTGTCGCCTCAAGAAATGCCTCAAAGTCGGCATGAGGAGGGAAGGTACGGGCAGGCGTCCTCCTGTTGTTGCTCTCGCTGTCCAGAGAGGCAGACTTCCGACCCAGTCTTATCACGGCCAGTTTGCTCTGACAAACGGAGACCCTCTCCAGTGTCATTCCTATCTATCGGGATACATCTCTCTCCTGCTGCGGGCCGAGCCCTACCCGACCTCCAGGTTCGGCTCTCAGTGCCTGCAGAGCAACAATATCATGGGCATCGAGAACATCTGCGAGCTAGCGGCCCGGATGCTCTTCAGCGCCGTGGAATGGGCTCGCAACATCCCTTTCTTCCCGGACCTGCAGGTAACGGACCAGGTGGCCCTGCTCCGCCTCACCTGGAGCGAACTGTTCGTCCTGAACGCCGCCCAGTGCTCCATGCCCGTCCACGTCGCCCCGCTGCTGGCCGCAGCCGGCCTCCATGCCTCCCCGATGTCCGCGGACCGGGTGGTGGCCTTCATGGACCACATCCGGGTCTTCCAGGAGCAGGTGGAGAAGCTCAAGGTGCTGCACGTAGATTCAGCAGAGTACAGCTGCATCAAGGCCATCGTGCTGTTCACCACAGATGCTTGTGGTCTGTCAGACGTGAGCCATGTGGAGGGTCTGCAGGAGAAATCGCAGTGTGCATTAGAGGAGTATGTGAGGAGCCAATATCCCAACCAGCCTAACAGGTTTGGGAAGCTGCTGCTCCGCTTGCCTTCCCTCCGCACCGTCTCTTCTTCTGTCATAGAGCAGCTTTTCTTCGTCCGTCTGGTGGGGAAAACCCCCATAGAAACTCTGATAAGGGACATGCTGCTGTCGGGAAGCAGCTTCAACTGGCCTTACATGCCTATTCAGTAGAATGAAAAGCTACAGGTGTGCTTCTATAAGGTCAGGAAAGGTCCCATACCTCAAATCAAGTCATTTCAGTGTGGCGTAAAATTGCTGTTGTTTCAAACAAGGGAAGAAAACTGCCAGTGGAATGAGTTACAGTAATAACAGGCATTTCCaatatacacatttttttttataccatcTGCCATTTCCTTGATACCAGAGGAGAGATCTGCCTAATGCTGCATGGTGTCCCGATGTGTCTATAGAAATGTCCCTGAAATAAATTAACCATTTTGCATACGTTAAAAGATTTCACCCCACTGGCAGAATTTTTTTACTTGTTCAAAGAGAAACAATATTTGAAATGACTATGGTTATGATGGACATTTTTTGCAGTGTGGTGACCACCCACAGTCTATGGTTTTTGGGATAACAAACAATATTTATTGGACCCTGTATGTATTTATCGTGCTTGTAAATTATgttttggctcttttttttaaaatgttttacgtaTTTTTGCCCCGGCAAGTGAAAAAACAGCAGGGATTGTCTCGTCTCattgtccttttttttcttttttctttcttttcataccTTCCAGACATGGCACTTTGGACTAAAGGGACATTTCAGAAAGATTTAACACAGGTGTTTGAAACCCCACATCATCTGACTTTAACCTATTTTATCATTTGTGTACAGACCGGATGGTGAGATGAATGCTCTGTTTTAGTTACTTTGGAGTCTTATTCTATTTGCATTATCGACATACTAAGAATGAAAGGAAAAAGAGCAAAAAGATATTTGGAAAACACACTTCTCATGGTCATGCAATGTGTTACTCCTTTCATAGGTAATGTCATTACTTTCTTACTTTAGTATTTTCTTAAATATTTTAGTTCATAATTCCTGCAGATGTAAATATTTCCTCTTGCCAAAGTGCTTAAtttccactcattttttttcatttgaatgatcaGATAATCCAGAACATCATGTTTATTTCTCATCAAATTAGTAAATTTTGCTGCTCAtcgttatttttcttttaaactgaGAGATGATGATAAGGCTAATTACGGGCAAAAATAGATAAAGGGATAAAGCTGACTGTACAGTAATCTGATATTTTCGTATTTGGAGGGGTGAAGTCAAACGTCGTATTCTTTTGACTGGTAACTTGTTACAGGGAAAAATAATGACATTACCTTAGTGGATTGATGATGAATGCATTACCAAACACTTGGGATTCCTCCATGTTTCCAGGTCTTTTACACTGACTGTCTCAGAGAGATTTCAAGAGCACTAAGCCTGATGTATACTGTACTACAGTCTCTTAATGGGATACATGAACTGTACACAACTTCCCCAACTCAAGTAACAAATCTGTTTCATTATTATTCATGCATTTATGAGCCCAGGCCACTTTCTGGCACACTAGACCACTGCAGGGTATTGCTGGACTGAAAGTTCGTGtatcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08548 NR2F2, TFCOUP2; COUP transcription factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33613 lncRNA upstream 75058 1302719 ~ 1302952 (+) True G24991
TU33606 lncRNA upstream 119194 1258519 ~ 1258816 (+) True G24984
TU33594 lncRNA upstream 123419 1253197 ~ 1254591 (+) True G24972
TU33533 lncRNA upstream 192783 1184725 ~ 1185227 (+) True G24926
TU33526 lncRNA upstream 199829 1175326 ~ 1178181 (+) True G24920
TU33637 lncRNA downstream 973 1386048 ~ 1386264 (+) True G25011
TU33634 lncRNA downstream 28020 1413095 ~ 1415747 (+) True G25008
TU33792 lncRNA downstream 384207 1769282 ~ 1774440 (+) True G25144
TU33862 lncRNA downstream 797731 2182806 ~ 2183770 (+) True G25203
TU33866 lncRNA downstream 797731 2182806 ~ 2183770 (+) False G25203
XM_039795697.1 mRNA upstream 13284 1312448 ~ 1364726 (+) True LOC120556244
XM_039794192.1 mRNA upstream 66250 1308822 ~ 1311760 (+) True LOC120555491
XM_039794041.1 mRNA upstream 109007 1262950 ~ 1269003 (+) True LOC120555381
XM_039794042.1 mRNA upstream 109007 1262950 ~ 1269003 (+) False LOC120555381
XM_039793914.1 mRNA upstream 126109 1246885 ~ 1251901 (+) True LOC120555232
XM_039795404.1 mRNA downstream 289666 1674741 ~ 1698359 (+) True zgc:165481
XM_039795363.1 mRNA downstream 404878 1789953 ~ 1817994 (+) True slc7a10a
XM_039794589.1 mRNA downstream 654388 2039463 ~ 2182754 (+) True phkb
XM_039794588.1 mRNA downstream 654389 2039464 ~ 2182754 (+) False phkb
XM_039794587.1 mRNA downstream 654389 2039464 ~ 2182754 (+) False phkb
TU33826 other downstream 454258 1839333 ~ 1842811 (+) True G25173
TU33868 other downstream 696883 2081958 ~ 2083319 (+) True G25204
TU34144 other downstream 2399858 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 3185298 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 4649134 6034209 ~ 6035193 (+) True G25708

Expression Profile