RNA id: XM_039796102.1


Basic Information

Item Value
RNA id XM_039796102.1
length 4843
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC120556464
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 9261211 ~ 9296717 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtcttgttttagacttgttagtgaacacacacacatatctcagAAAGACTAATTTTGGAAATGGAACAAGGAAGACCGGTTCGTGGAGGGAGAAGGGTGGCAGGGAGAGGGCGGATACGTGGAGGAAGAcaaagaagacaaagagctgtTATTTCAGATGAAATAAGGTCTACACTTATAGACCATGTCCTGAACCATGGTCTCTCATTGAGAGAGGCAGGGTTGAGGGTGCAACCCAATCTGCAAAGATCCACAGTGGCATCTGTAATGCGAATTTTCCATCATACAAACAGACTGACTTTAGATCAGAAGATGAGTgatttggaggaagaggaggatggagcAGAGTCTGTAGTATCTGACTGTCTGTCAATGAAGAGTGATTTTTCCAAAGACGAACCTCCATTCTTCAGTAATgaacctggaccctcagacacaaaACTGACTTTAGATCAGAAGATGAGTgatttggaggaagaggaggatggagcAGAGTCTGTAGTATCTGACTGTCTGTCAATGAAGAGTGATTTTTCCAAAGACGAACCTCCATTCTTCAGTAATGAACCTGGACCCTCAGATACAAAAGAGCGGAAGATGAGTGATGTTTCTGTGGAGGAGCAGCGGTCTAGATCTAGAACAAGAGCTGAACTGCAGACAGCCGGTCAGACCAGCACTGTACAAATGAGATGTGGTCTGCAGAACCAGCATGAACATAAGATCTATCTGAAGAGGACATGTGAGCATGCAACGGAAGGAGCTCATAAAACATGTAGTGAAACTCCCCTCAACAGGATCTACAATGAGCTCTACATCACAGAGGGATGGAGTGAAGAGGTTAATACCCAGCATGAGGTGAGGCAGCTTGAGGCGGCTTCCAAGATCCTCCATGACACTCCAATCAAGTGCAGCGTTATCTTTAAAGCCTTATCTGGCCAACAGAAACACATCATAGTCGTTCTGACGATCGGCGTTGCTGGTGTTGGAAAAACCTTTTCCGTGCAGAAGTTCTCTCTGGACTGGGCCGAGGGTTTGGAAAACCAAGATATCAGTTTGGTGATTCCGCTTTCGTTCAGGGAGCTGAACTTGATCAAAGATGAGCAGTACAGTCTTCTGGAGCTGCTCCATGTTTTCCATCCAGCATTGCAGACGGCCACAGCAGAGCAGCTTGCTGGCTGGAAAGTtttgttcatctttgacggccTGGATGAAAGCAGACTTTCACTGGATTTCAACAACAATGAGGTTGTGTCTGATGTCACGCAGAACTCATCGGTCAACTTGCtgttgacaaacctcatcaaGGGGAAGCTGCTTCCCTCGGCTCTCGTCTGGATAACTtcccgacctgcagcagccaatcagatcgtTCCTGCATTTGTTGACAGGGTAACAGAAGTACGAGGCTTCACTGACGCCCAGAAGGGGGAGTACTTCAGGAGAAGAGTCAGTGATGAAGAGTTgtccagcagaatcatctcccacatcaagacatccaGGACCCTCCACATAATGTGTCagatcccagtcttctgctggatcactgctacagttcttgACCACATGTTGACTACAGACCagagaggagagctgcccaagaccctgactgacatGTACTCACACTTCTTGCTGGTTcagacaaagaggaagaagcaCAAGTATTCTGAGGGACATGAGATGAGTCCACAGGAGCTGTCAGAGTCTGACAGGGAAGTTCTTCTAAAGCTGGGGAGGCTGGCATTTGAACAGCTGGAGAAAGGAAACATCATTTTCTACCAGGAAGACCTGGAGCGCTGTGGTCTTGATGTCTCAGAGGCCTCGGTGTACTCAGGAGTTTGTACACAGATCTTCAAAAGAGAGAATGCGATCTTCCAGAAAACAGTCTACTGCTTCGttcatctgagtgttcaggagtttctggctgcagtCTACCTGTTCCACGGGTACACCAACAGGAACAAAAAGGTACTCAAGGACTTCCTGGGGAAAGACTGGAAATCAAAGAACAGTGACTTATCTATGGATGTTTTCTTGATGAAAGCCATGGATAAATCCCTGAAAAGTAAAAATGGCCACCTGGACCTCTTTGTCCGTTTCCTTTATGGCCTCTCTCTGGAGTCCAACCAGAGCCTCTTAGGAGGCCtgctgagacagacagacaacagtacAGAAATCATCCAGCGAGCCATCACCAACCTGAAGAAAAAGAGAACCAAAACCTCTCCTGACAGAAGCATCAACATCTTCCACTGTCTGATGGAGATGAACGACCACTCAGTCCATCAGGAGATCCAAGAGTTCCTCAAGTCAGAGAATAGATCAGAGAAGAAACTCTCTATGATCCACTGCTCAGCTCTGGCCTACATGATGCAGATGTCAGAGAAGGTTCTGGATGAGTTGGACCTGCTGAAGTACAACACAACAGCTGAGGGACGACtgagactgattccagctgtgaGGAACTGCAGAAAGGCTGTACTTTCTCATTCTCAACTTTCTGAGACTCACTATGAAGTTgtggcctcagctctgaagtctaacccctcccatctgagagagctggacctgagtaggaactacaacctgcaggattcagatATGAAGCTGCTGTGTGCTGGATTGGAGAGTCCACACTGTGGACTGGAGAATCTGAGATTGAGTCATTGCAGTTTGTCAGAAATCAGCTGTGCTCCCCTAgcctcagctctgaagtccaacccctcccatctgagcgAGCTGAAGCTGAATTACAACaagctgcaggattcaggagtgaagctgctgtgtggtttTCTGGAGAGTTCACACTGTAGACTGGCGACTCTCAGattgaGTCAGTGCagtttgtcagagatcagctgtgctgCCCTGGCATCAGCTCTGAATGCCAACCCCTCCTATCTGAGAGTGCTGGAGCTGAGTTACAACaagctgcaggattcaggagtgaagctgctgtgtggttttctggagagacaacactgtagactggagactctgagatTGAGTTACTGCAGTTTGTCAAAGATCAGCTGTGCTCTCCTGGCCTCGGCTCTGAAGgacaacccctcccatctgagggAGCTGGACCTGAGATACAACATCAAGCTGAAGGATTCAGACATGAAGTCAGTAGAGGGTTGGAGTTAGTCCATGCTGGTTTCAGCAGTATTGAACGATACACAGTTAGTATCAAAGCAAAGATCCAGTATTTCCTGTAAACCTCCAACCTTCTCAGTGAAGCTGTGAGAGGACAATggtgacacagagagaaaacagtCAGCCAATCAAATAAGCCAGACGCTTGTTGTGATCATGTGTTAGAGTTGATGTGAAGAAGActgttgatgttgtgttcaTGTCCACAGGAAAACAAGCTTGATTACAGCTGACACACACATGTCAAAACATGTACAGCAACAGCAAACTATCCAACCATCAAATCTGATCTCAAAGTATTTGTTCTCTCACTGCAACACTAAACAAATGATCAGGTCATCTTTGTCACAactatgagatcagtctgataTAGTGGTGTAACGGACCATTGTTGATCTCTTTGTAAAATGCAATCTGATTATTCCCAGGATTTAGAGAGTCCGCCGCTTCGTCATGACCCCGCAGTGCTGTTTCACATTTTCCACACAGTTTAATACATGTTATGATCCGACTGAGCACGTACCTGTTTGCCTCCACCTGTTTGTTATGTTGCTCAATGGAACACCTGTACGCACTGCCAATTTGGGCAGCGACATTTACCCTTATAAGTAAGCCCAACTTCATAGCATTATCCAGATGACTCCCGTTGTGATCTGTTTCAAATCTGTATAATCTGTCCTCGACCAACCCGTCCATCTCCCCCAAATAGGAGaaggaaaaaggaaaggaaacagaAGAGTGACTTCTTTTGTATGCGAACAGttagccactttttttttttcaaaccacTCCATATTAAACTTGcggttactttaaaaaaaataaaatcctaacATGAATGAAATGCAATTTAGGAAGATGTTATATTCATAGAAGATAATACATTATAAGAGATAATCTTCAAGAAATTACACAATTTGTTTGCTGTTCTTTCTGTTGACAGGGCTTTGCTCCACCTGCCCCTGATGACCAGTCGCCACTGATAAATACAAAAGTACCAAAGCGGCAGCAACTTGTCTGCAGGAGCGAGCATCAAGCCAAGAGGGCTAGCAAAGCAGGGTAGCATATCCTAACTTGTTAGCCTTCGCTAGCTTGGTAACTTCAAGCTACATACCTCTCAAGTCTCACGCATTGGGCGTGAGACACACGCATTTCAACCCGTTCACACGCTCACACGCcacaccttgtatttctcacgcagaTAAATTACCAGGATAACGCCCACCAGGTTGCGCTgctattttttaaacagtggaaCAGTTAGAGGAATCAAGTGAGTTCCCCCATAGAGTTCAGAAGGCCCTGCCACGCACCAGCTGAGTGAGTGCGGATTTCAAGTTGCGGATTTCGTCGACAAgtgtactcgccctgttgtttatctggttgctatgacttcgcgagtgatgacgtcctgtcactgttccagttgaggggagagagagaggatgacagatcgcttgagttcagtagagcacacgGCTCTGTAGAGTCATGGaattatgactttatatactacatgtacatagcggaaacccttttgtgcgtctgccctatttctgatactgtggcggcagaaatcaacatagaggaaacactgggtgGCTTTTGCGCCTATTATTATTaggcccgagcacgaaagtgcaaggccccaacggtgccttgcactgaaagtgcgaagaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35161 lncRNA upstream 16758 9240665 ~ 9244453 (+) True G26276
TU35158 lncRNA upstream 22646 9236352 ~ 9238565 (+) True G26273
TU35098 lncRNA upstream 440227 8820753 ~ 8820984 (+) True G26218
TU35097 lncRNA upstream 444595 8816407 ~ 8816616 (+) True G26217
TU35096 lncRNA upstream 448179 8812828 ~ 8813032 (+) True G26216
TU35185 lncRNA downstream 2771 9299488 ~ 9300207 (+) True G26297
TU35205 lncRNA downstream 36513 9333230 ~ 9348325 (+) True cers3a
TU35228 lncRNA downstream 164200 9460917 ~ 9473100 (+) True G26335
TU35243 lncRNA downstream 310026 9606743 ~ 9608997 (+) True G26347
TU35268 lncRNA downstream 356867 9653584 ~ 9655329 (+) False asb7
XM_039795212.1 mRNA upstream 169701 9056333 ~ 9091510 (+) True abhd17c
XM_039794377.1 mRNA upstream 510331 8745162 ~ 8750880 (+) True mesd
XM_039795650.1 mRNA upstream 639499 8604276 ~ 8621712 (+) True stard5
XM_039796111.1 mRNA upstream 659534 8547187 ~ 8601677 (+) True LOC120556467
XM_039795961.1 mRNA downstream 36512 9333229 ~ 9378611 (+) False cers3a
XM_039795962.1 mRNA downstream 36512 9333229 ~ 9378611 (+) False cers3a
XM_039795147.1 mRNA downstream 94391 9391108 ~ 9604462 (+) True adamts17
XM_039794581.1 mRNA downstream 335290 9632007 ~ 9642958 (+) True lins1
XM_039794583.1 mRNA downstream 335290 9632007 ~ 9642958 (+) False lins1
TU35121 other upstream 105868 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 500910 8753701 ~ 8760301 (+) True G26205
TU34538 other upstream 2971435 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 2971435 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 2973134 6287048 ~ 6288077 (+) True G25743
TU35242 other downstream 270114 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 550560 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 2734904 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 3813040 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 3938518 13235235 ~ 13237819 (+) True LOC120556202

Expression Profile