RNA id: XM_039796111.1


Basic Information

Item Value
RNA id XM_039796111.1
length 3990
RNA type mRNA
GC content 0.52
exon number 22
gene id LOC120556467
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 8545261 ~ 8601678 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTGGGCTCACACATTCAACTGCATACACTCTGAGCAAAGAGAGACGGCATGAGTACAGTGTCTGAATCTTTGGTTGGCAGCAGCAGGTCTCTGTCTGCAGCCAAGAGACACAAAAGTATCAGGAAGAACTCCAGAAGGATTTATTCAGCCTACCAGGAGCAGGGCTCCTCAGATGATGAAGATAAACAGGATGAGCGGGTGGACAGCAACGACCCAGAGGAGATGTTCCAGAACATTCAGTACCAGAAGGAGATCATCGCCAACATTCGGACCAGACCCTGGCCAATGAGACGCAAGCTCAAAGTCCTAAAGCAGGCCAGAGAGATTGTTCTGCGGTATGAGGGCCGACTCACCAGAACCAGAGGTTACCAGACTGCAGGAGCTGATCTGCTGAAAAAAGTTTCACGCGTGCTTTACAATGTTGTGGTTCTGTTCATTCCCTGGGAAGTGAGGATCAAGAAAATTGAAAGTCACTTTGGGTCGGGCGTGGCCTCCTACTTTATCTTCCTGCGCTGGTTGTTCGGGATCAACATCGTCCTCACCATCATGACTGGAGCCTTCATCGTCCTACCAGAGCTGCTGGCTGGAGCTCCGTTTGGAACGACGAGGAGTAAAACTATCCCCAAGGAGCATCTGGCTTCAGCCCAGGACCTGGACACCATCTGGTCTCTTGGGGGCTACCTGCAGTACTCTGTCTTATTCTATGGCTACTATGGCAGGCTGAGGAAGATCGGCAGCGCAGGGTACCGGTTGCCCCTCGCCTACTTCCTGGTTGGGATGGCTGTGTTTGCCTACAGTTTCATCATTCTGTTAAGAAAAATGGCAAAGAACTCTCGTCTGAGCCTGGCCAGTGCCTCGGATGAGAACTTCACGTTCTGCTGGAGAGTTTTCTGTGCCTGGGATTACCTGATAGGAAACCCGGAGGCTGCAGAGAGCAAAGGAGCCGCCATCGTCAACAACATCAGGGAAGCCATTGTTGAGGagcaggaaaagaagaaggatACCAGTCTgGCGGTTCTGATCAGTCTGCGTATCTTAGCCAACATCCTGGTGCTGCTGTCCCTGGCCGGCAGCATCTACATCATCTACTTTGTGGTGGACCGCTCTCAGAAACTGGAGCAGGAGAAGCCTGAGCTGACGCTGTGGGAGAAGAACGAGGTGAGTGTGGTGGTTTCTCTCATCACCATGATTGCTCCGTCTGCCTTTGAGCTGGTGGCTCAGCTGGAGATGTACCACCCACGGACCTCGCTGCGCTTCCAGCTGGCCAGAGTGCTTGTTTTATACCTGGGGAATCTCTACAGCCTTATTATTGCCCTCTTCGATAAGGTCAACAGTATGAGCTCTGCTGTCCCAGTGAGTCCAGGTAACTGGTCTGACTCCAGCTCCTTTCTGGCCACCATCTCTCAGCCGGAGGTAGACAGCTTCTCCACGCTGGTTTCTGACATCTCTGTCTCCGAGCATCGCAACAGCACCATAGCGACCATTGCCACGGTGCTGGTCGTTAGGAACAGCAGCGTGAGCAGCTCAGGGAGCGTCTTCAACCAGACAGCTCTGTTTGAGAAGAACACCCGCTCTCAGCAGGACCCCTGCTGGGAGACCTACGTTGGACAGGAGATGCTGAAGCTGTCCATCATTGACATGATCTTCACGGTGGCCAGCATCCTGCTCATTGACTTCATCAGAGGGTTGGTGGTTCGCTACCTgagtgactgctgctgctgggatttAGAGAGCAAGTTTcctgaatatggaGAATTCAAAATAGCAGAGAATGTTTTGCATCTGATTTATAACCAAGGGATGATCTGgATGGGAGCGtttttctctccctgtctccctgccTTCAACGTGTTAAAGCTGATTGGTCTGATGTATCTGAGGAGCTGGGCCGTCCTCACCTGCAATGTCCCCCATCAGCAGGTGTTCCGAGCCTCcagATCAAACAATTTCTACCTGGCTATGCTGCTTTTCATGCTGTTTCTGTGTATGCTGCCCACCATCGTCGCCATAGTGAGATACAGACCATCACAGCACTGTGGACCATTCAGTGGTCAAGAGAAGATATATGACATCATCTCTGAAACAGTGGCCAATGACTTCCCCCTGTGGTTCAGTAAAGTGATGAGTTACGTCACTAGCCCTGTCGTAGTGCTGCcggcactgctgctgctgttCATGCTGATATACTATCTCCAGGCCATAGCCAGATCCCTCAAATTCACCAACAACCAGCTGAGAATGCAGCTCCAGACTGAGCGGACCGAGGACAAGAAGAAAGTCTTCCAGATGGCTGCAGCAAGGCTGCAGGCTCCAGAGGCTGCGGTGGACAAAAAGCCAGATGAGCAAGAGAGTGACATCACGAGCCAGGAGGCCTCCATTCACACTCCATCTCCCCGACGCAACGGCAGCGTCACAAACTTCAACTCCCCTGTTCGTCGTGGTAACAGCATCCGCACCATCACCCAATCAGCGTCCAGGGCGGACCTGAACAGAGGAAGGGGGGCTGGATCTGTCAGAAGTCCAACAGTGACCATACTGCCCAAACACAGGCCGGAGCACGTTCCTAACAGACCACCGCCCTTCTTCGGTGGCCCTAGTGGGACCTGCAGGTCCAAGTCCTACCACCACATGGCGTACAATCCCCCAGCTCGCTATTCTGACAAGATCCACTCTGACCCCCTGTACAGGAAGACCATACGCTCCATACATCCGGTCGAGGCTGCCGGGATCATCACTGCGCAGAGTTATGGAGGACGGCGCGGCCCCACCACCCGCTACGTGATCGTCAACGAGCACGATCCCCGGAAGAAGCTGCTGCGCTCGGCCACACGGGTCCCGCGCCATTACCTCATGGAGGAGCCCGCAGAGATCCTGGAGCTGTACCCACGCAACTTCAAACGCTACCCGCCGCGCACTGCTCACCGCCAACCGCATCCTCACCGGCCCCAGCCATCGCAGCCACATCTGAgcgaagaggaagaggaggaggataagGGAAAAGGCAGGAGAAGGCTGTCGCTGGGGAAGACTCATCGGCCCCGTTCCCTCTCTGACCTCCACCAGCCGGCGCACTTCTACATCGGGGACCGCGGGGAGAGCCACGCGTCAATGGctaaagacagacacactgcTCGAGGAAGATGTGGCGCGCAggaagaggatgaagaggaggaggatgtcgaAATGGACTGGGGCGGTTTAGAGTCACACTCCCAGTCCCAGACCAGTTTGAGAGGAGCAGACTCTCTGCTTGTGCGAAGCAGGCGTCACATCCATTCCCCAGGAAGACACTGTCAGTCCCCAGCCCGGACCAGGCACATGGAGGCTTATGTGAAGCCCAAGACGAGACCAAAGCTGGAGACCCCACTGACCGAGTCCGACTCAGCGTCCCTGGCCTCCAGCAGTGACCagcagaacagcagcactgaccAGTACATTCAGGTCATCCACAACAAGGAGCACTATCTCAAGTCCAGTGCTAGGCAAGGAAAGCTTGGCAAAAAGAAGTCCAAAACCAGCTTTGATCTAAATGTCACTGAGTCCAatgacctggtctgctccaatGTGTGACATCTCCTTTGCTAAAATGATGTATTCTGGTcaaatgtttttcaaaatatGATAGAAATATACACTTAGCGTTATTAAAACATTGCATTGAAAGCACAGAAAATATATTATTACAGTATAAATGTGATTTCTTTCCCCTATGTGTGTTGTCTTGTATCATTTTGAAACAACTGTCAGCACGTGTTGGTATTGCAATGTGTATATTCAAACCATACTACATTGACGCTATTAGTGTAACATCAGCTGTGAACACAAATACAGTTTACATAATTACACTTGCTTCCCACACAGCATATAATAGTAATCTCCCATTGATCAGACACTGAGGGCCCTATTTCAATGATCTAAGTGAATGGCGTGAAGCGCAGGGCACAGGTGTGTTTTTAGGGcttgtccaaatccacttttgctagtttga

Function

GO: NA

KEGG:

id description
K21988 TMC; transmembrane channel-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638723.1 lncRNA upstream 48331 8497892 ~ 8498856 (+) True LOC120555519
TU34966 lncRNA upstream 176362 8370582 ~ 8370825 (+) True G26098
TU34964 lncRNA upstream 268128 8278307 ~ 8279059 (+) True G26096
TU34963 lncRNA upstream 282022 8264932 ~ 8265165 (+) True G26095
TU34961 lncRNA upstream 283244 8263701 ~ 8263943 (+) True G26093
TU35084 lncRNA downstream 160288 8761965 ~ 8762290 (+) True G26206
TU35085 lncRNA downstream 164885 8766562 ~ 8766987 (+) True G26207
TU35086 lncRNA downstream 165359 8767036 ~ 8767243 (+) True G26208
TU35088 lncRNA downstream 171403 8773080 ~ 8773325 (+) True G26210
TU35089 lncRNA downstream 173770 8775447 ~ 8775662 (+) True G26211
XM_039794990.1 mRNA upstream 400260 8140884 ~ 8146927 (+) True mex3b
XM_039794987.1 mRNA upstream 477520 7939212 ~ 8069667 (+) False efl1
XM_039795650.1 mRNA downstream 2599 8604276 ~ 8621712 (+) True stard5
XM_039794377.1 mRNA downstream 143485 8745162 ~ 8750880 (+) True mesd
XM_039795212.1 mRNA downstream 454656 9056333 ~ 9091510 (+) True abhd17c
XM_039796102.1 mRNA downstream 659534 9261211 ~ 9296717 (+) True LOC120556464
XM_039795961.1 mRNA downstream 731552 9333229 ~ 9378611 (+) False cers3a
TU34538 other upstream 2257411 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 2257411 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 2259110 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 2280479 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 2494290 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 152024 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 467052 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 965154 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 1245600 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 3429944 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile