RNA id: XM_039796114.1


Basic Information

Item Value
RNA id XM_039796114.1
length 3848
RNA type mRNA
GC content 0.53
exon number 22
gene id LOC120556467
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 8545261 ~ 8601678 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gacggccatgaccggcgagctgcagCTCCTCAGATGATGAAGATAAACAGGATGAGCGGGTGGACAGCAACGACCCAGAGGAGATGTTCCAGAACATTCAGTACCAGAAGGAGATCATCGCCAACATTCGGACCAGACCCTGGCCAATGAGACGCAAGCTCAAAGTCCTAAAGCAGGCCAGAGAGATTGTTCTGCGGTATGAGGGCCGACTCACCAGAACCAGAGGTTACCAGACTGCAGGAGCTGATCTGCTGAAAAAAGTTTCACGCGTGCTTTACAATGTTGTGGTTCTGTTCATTCCCTGGGAAGTGAGGATCAAGAAAATTGAAAGTCACTTTGGGTCGGGCGTGGCCTCCTACTTTATCTTCCTGCGCTGGTTGTTCGGGATCAACATCGTCCTCACCATCATGACTGGAGCCTTCATCGTCCTACCAGAGCTGCTGGCTGGAGCTCCGTTTGGAACGACGAGGAGTAAAACTATCCCCAAGGAGCATCTGGCTTCAGCCCAGGACCTGGACACCATCTGGTCTCTTGGGGGCTACCTGCAGTACTCTGTCTTATTCTATGGCTACTATGGCAGGCTGAGGAAGATCGGCAGCGCAGGGTACCGGTTGCCCCTCGCCTACTTCCTGGTTGGGATGGCTGTGTTTGCCTACAGTTTCATCATTCTGTTAAGAAAAATGGCAAAGAACTCTCGTCTGAGCCTGGCCAGTGCCTCGGATGAGAACTTCACGTTCTGCTGGAGAGTTTTCTGTGCCTGGGATTACCTGATAGGAAACCCGGAGGCTGCAGAGAGCAAAGGAGCCGCCATCGTCAACAACATCAGGGAAGCCATTGTTGAGGagcaggaaaagaagaaggatACCAGTCTgGCGGTTCTGATCAGTCTGCGTATCTTAGCCAACATCCTGGTGCTGCTGTCCCTGGCCGGCAGCATCTACATCATCTACTTTGTGGTGGACCGCTCTCAGAAACTGGAGCAGGAGAAGCCTGAGCTGACGCTGTGGGAGAAGAACGAGGTGAGTGTGGTGGTTTCTCTCATCACCATGATTGCTCCGTCTGCCTTTGAGCTGGTGGCTCAGCTGGAGATGTACCACCCACGGACCTCGCTGCGCTTCCAGCTGGCCAGAGTGCTTGTTTTATACCTGGGGAATCTCTACAGCCTTATTATTGCCCTCTTCGATAAGGTCAACAGTATGAGCTCTGCTGTCCCAGTGAGTCCAGGTAACTGGTCTGACTCCAGCTCCTTTCTGGCCACCATCTCTCAGCCGGAGGTAGACAGCTTCTCCACGCTGGTTTCTGACATCTCTGTCTCCGAGCATCGCAACAGCACCATAGCGACCATTGCCACGGTGCTGGTCGTTAGGAACAGCAGCGTGAGCAGCTCAGGGAGCGTCTTCAACCAGACAGCTCTGTTTGAGAAGAACACCCGCTCTCAGCAGGACCCCTGCTGGGAGACCTACGTTGGACAGGAGATGCTGAAGCTGTCCATCATTGACATGATCTTCACGGTGGCCAGCATCCTGCTCATTGACTTCATCAGAGGGTTGGTGGTTCGCTACCTgagtgactgctgctgctgggatttAGAGAGCAAGTTTcctgaatatggaGAATTCAAAATAGCAGAGAATGTTTTGCATCTGATTTATAACCAAGGGATGATCTGgATGGGAGCGtttttctctccctgtctccctgccTTCAACGTGTTAAAGCTGATTGGTCTGATGTATCTGAGGAGCTGGGCCGTCCTCACCTGCAATGTCCCCCATCAGCAGGTGTTCCGAGCCTCcagATCAAACAATTTCTACCTGGCTATGCTGCTTTTCATGCTGTTTCTGTGTATGCTGCCCACCATCGTCGCCATAGTGAGATACAGACCATCACAGCACTGTGGACCATTCAGTGGTCAAGAGAAGATATATGACATCATCTCTGAAACAGTGGCCAATGACTTCCCCCTGTGGTTCAGTAAAGTGATGAGTTACGTCACTAGCCCTGTCGTAGTGCTGCcggcactgctgctgctgttCATGCTGATATACTATCTCCAGGCCATAGCCAGATCCCTCAAATTCACCAACAACCAGCTGAGAATGCAGCTCCAGACTGAGCGGACCGAGGACAAGAAGAAAGTCTTCCAGATGGCTGCAGCAAGGCTGCAGGCTCCAGAGGCTGCGGTGGACAAAAAGCCAGATGAGCAAGAGAGTGACATCACGAGCCAGGAGGCCTCCATTCACACTCCATCTCCCCGACGCAACGGCAGCGTCACAAACTTCAACTCCCCTGTTCGTCGTGGTAACAGCATCCGCACCATCACCCAATCAGCGTCCAGGGCGGACCTGAACAGAGGAAGGGGGGCTGGATCTGTCAGAAGTCCAACAGTGACCATACTGCCCAAACACAGGCCGGAGCACGTTCCTAACAGACCACCGCCCTTCTTCGGTGGCCCTAGTGGGACCTGCAGGTCCAAGTCCTACCACCACATGGCGTACAATCCCCCAGCTCGCTATTCTGACAAGATCCACTCTGACCCCCTGTACAGGAAGACCATACGCTCCATACATCCGGTCGAGGCTGCCGGGATCATCACTGCGCAGAGTTATGGAGGACGGCGCGGCCCCACCACCCGCTACGTGATCGTCAACGAGCACGATCCCCGGAAGAAGCTGCTGCGCTCGGCCACACGGGTCCCGCGCCATTACCTCATGGAGGAGCCCGCAGAGATCCTGGAGCTGTACCCACGCAACTTCAAACGCTACCCGCCGCGCACTGCTCACCGCCAACCGCATCCTCACCGGCCCCAGCCATCGCAGCCACATCTGAgcgaagaggaagaggaggaggataagGGAAAAGGCAGGAGAAGGCTGTCGCTGGGGAAGACTCATCGGCCCCGTTCCCTCTCTGACCTCCACCAGCCGGCGCACTTCTACATCGGGGACCGCGGGGAGAGCCACGCGTCAATGGctaaagacagacacactgcTCGAGGAAGATGTGGCGCGCAggaagaggatgaagaggaggaggatgtcgaAATGGACTGGGGCGGTTTAGAGTCACACTCCCAGTCCCAGACCAGTTTGAGAGGAGCAGACTCTCTGCTTGTGCGAAGCAGGCGTCACATCCATTCCCCAGGAAGACACTGTCAGTCCCCAGCCCGGACCAGGCACATGGAGGCTTATGTGAAGCCCAAGACGAGACCAAAGCTGGAGACCCCACTGACCGAGTCCGACTCAGCGTCCCTGGCCTCCAGCAGTGACCagcagaacagcagcactgaccAGTACATTCAGGTCATCCACAACAAGGAGCACTATCTCAAGTCCAGTGCTAGGCAAGGAAAGCTTGGCAAAAAGAAGTCCAAAACCAGCTTTGATCTAAATGTCACTGAGTCCAatgacctggtctgctccaatGTGTGACATCTCCTTTGCTAAAATGATGTATTCTGGTcaaatgtttttcaaaatatGATAGAAATATACACTTAGCGTTATTAAAACATTGCATTGAAAGCACAGAAAATATATTATTACAGTATAAATGTGATTTCTTTCCCCTATGTGTGTTGTCTTGTATCATTTTGAAACAACTGTCAGCACGTGTTGGTATTGCAATGTGTATATTCAAACCATACTACATTGACGCTATTAGTGTAACATCAGCTGTGAACACAAATACAGTTTACATAATTACACTTGCTTCCCACACAGCATATAATAGTAATCTCCCATTGATCAGACACTGAGGGCCCTATTTCAATGATCTAAGTGAATGGCGTGAAGCGCAGGGCACAGGTGTGTTTTTAGGGcttgtccaaatccacttttgctagtttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638723.1 lncRNA upstream 46405 8497892 ~ 8498856 (+) True LOC120555519
TU34966 lncRNA upstream 174436 8370582 ~ 8370825 (+) True G26098
TU34964 lncRNA upstream 266202 8278307 ~ 8279059 (+) True G26096
TU34963 lncRNA upstream 280096 8264932 ~ 8265165 (+) True G26095
TU34961 lncRNA upstream 281318 8263701 ~ 8263943 (+) True G26093
TU35084 lncRNA downstream 160289 8761965 ~ 8762290 (+) True G26206
TU35085 lncRNA downstream 164886 8766562 ~ 8766987 (+) True G26207
TU35086 lncRNA downstream 165360 8767036 ~ 8767243 (+) True G26208
TU35088 lncRNA downstream 171404 8773080 ~ 8773325 (+) True G26210
TU35089 lncRNA downstream 173771 8775447 ~ 8775662 (+) True G26211
XM_039794990.1 mRNA upstream 398334 8140884 ~ 8146927 (+) True mex3b
XM_039794987.1 mRNA upstream 475594 7939212 ~ 8069667 (+) False efl1
XM_039794985.1 mRNA upstream 475594 7941560 ~ 8069667 (+) False efl1
XM_039794984.1 mRNA upstream 475594 7941637 ~ 8069667 (+) True efl1
XM_039794986.1 mRNA upstream 475594 7941637 ~ 8069667 (+) False efl1
XM_039795650.1 mRNA downstream 2600 8604276 ~ 8621712 (+) True stard5
XM_039794377.1 mRNA downstream 143486 8745162 ~ 8750880 (+) True mesd
XM_039795212.1 mRNA downstream 454657 9056333 ~ 9091510 (+) True abhd17c
XM_039796102.1 mRNA downstream 659535 9261211 ~ 9296717 (+) True LOC120556464
XM_039795961.1 mRNA downstream 731553 9333229 ~ 9378611 (+) False cers3a
TU34538 other upstream 2255485 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 2255485 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 2257184 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 2278553 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 2492364 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 152025 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 467053 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 965155 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 1245601 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 3429945 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile