RNA id: XM_039796125.1


Basic Information

Item Value
RNA id XM_039796125.1
length 906
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC120556481
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21286843 ~ 21287974 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGATCTTCCTACGGGAAAAAGAAAGCGCAAGCTTAAATTTAGTGAAGAAGAAATTAACATCTTAGTGCATGAAGTAACCGCAAACCTGAACATATTACAGGGCAGAACATCCACACCCTcggaaaaaaatgcaatttggATTACCATAACAAATAAAATCAACTCGTTATCATCTACACGGAGAGAAGTGGAGGAGGTAAAAAAACGGTGGCAAGACATAAAGCGCAGGACAAAAGAGAAGGTTGCGTACAACCGGGCACAATCGAGGAGAACCGGTTCAGGTCCACCAGAAATAGACACGCTAACTACTACAGAAGAGGTGGTGCAGCAAACACTCGTTGCCGAACAGGTGGAAGGTGTTGACGGCATAGATACTGCTGAGGTCTCTGTAGAGATTGAAGCGTTAGGGGAACCACTTGCACCGCCTGGCCTGTCTCAGCCTCCTGTGCAACCTGCCTCGTCTCAGCGTCCTGCACGCAGGATAGATGATATTGATGAAATGCTGTTGACTGAGCAATGCGCCCAGACAAAGGCCCTTCAACATATATCTGGTAATGTGCAGCAGATGAACCGTGAAATGAGACGGAATAACGGGCAGGTAAAGGAACTGGTTAGTGCAATGAATGGATTGGCCAGGGCAGTAACCAGATTATGTCGTCACCAGCAACAGACCAACGACTGCCTAAGGACCATTGCTGCAGGCATGGTTGGTGGTCTGCAGGGGACCTCTGGCGTCTTATCCACACCTGCAGCATCCACATGTGCAGCCTCCACGTCTGCGCCACCTACACCTGTGCCATCCAGCATGGCACAATCCGCGCCATTCACCCCAGTGACACATGAGCCTCTTCCAGCCAAATCTATGCCCACACGTGTtctaagaaaaagaaaaaggcctAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638733.1 lncRNA upstream 143653 21142725 ~ 21143190 (+) True LOC120555568
TU38260 lncRNA upstream 213088 21073541 ~ 21073755 (+) True G28792
TU38243 lncRNA upstream 460366 20826224 ~ 20826477 (+) True G28778
TU38242 lncRNA upstream 489172 20797412 ~ 20797671 (+) True G28777
TU38241 lncRNA upstream 509027 20777543 ~ 20777816 (+) True G28776
TU38272 lncRNA downstream 33338 21321312 ~ 21321625 (+) True G28804
TU38282 lncRNA downstream 69358 21357332 ~ 21456540 (+) True G28812
TU38321 lncRNA downstream 121678 21409652 ~ 21412834 (+) False LOC120556583
XR_005638869.1 lncRNA downstream 121879 21409853 ~ 21413209 (+) False LOC120556583
TU38322 lncRNA downstream 123079 21411053 ~ 21412834 (+) True LOC120556583
XM_039794835.1 mRNA upstream 593869 20504098 ~ 20692974 (+) True LOC120555780
XM_039794839.1 mRNA upstream 593869 20504098 ~ 20692974 (+) False LOC120555780
XM_039794838.1 mRNA upstream 593869 20504098 ~ 20692974 (+) False LOC120555780
XM_039794837.1 mRNA upstream 593869 20504098 ~ 20692974 (+) False LOC120555780
XM_039794840.1 mRNA upstream 593869 20504098 ~ 20692974 (+) False LOC120555780
XM_039795974.1 mRNA downstream 43179 21331153 ~ 21352064 (+) True nkpd1
XM_039795976.1 mRNA downstream 43179 21331153 ~ 21352064 (+) False nkpd1
XM_039795975.1 mRNA downstream 43919 21331893 ~ 21352064 (+) False nkpd1
XM_039795984.1 mRNA downstream 84183 21372157 ~ 21374142 (+) True trmt10c
XM_039795981.1 mRNA downstream 93235 21381209 ~ 21390547 (+) True ercc5
TU38234 other upstream 525696 20711104 ~ 20761147 (+) True G28770
XR_005638835.1 other upstream 1766625 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 1788619 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 1788970 19497738 ~ 19497873 (+) True LOC120556587
TU38013 other upstream 1799310 19487246 ~ 19487533 (+) True G28581
TU38307 other downstream 108239 21396213 ~ 21403450 (+) True G28826
unassigned_transcript_140 other downstream 1259227 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 1476745 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 1579746 22867720 ~ 22881366 (+) False ankrd11
TU38851 other downstream 1704163 22992137 ~ 22992502 (+) False LOC120555548

Expression Profile