RNA id: XM_039796201.1


Basic Information

Item Value
RNA id XM_039796201.1
length 1719
RNA type mRNA
GC content 0.46
exon number 7
gene id gpalpp1
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19508685 ~ 19511713 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAGCCTCATTGTGTTTACTTCCTGGGTGAAAGGTGAAATTCGTCGTTCGAGGTTCCTCCAGCGAatctttgttttgtcttgtttatggagaagcttttagtttttagttttttactttGATAGAAATTGCTAAAACTACGTGACTCAgtaagtagctagctagctaagccaTCCGTTTAAAATATGTCGTCAATCAGACCTGCTTTACCCCCGATGTGTGTAAAGGAGGAGAGGGATGAAGACTCTGATAGTGATGAAGGATTCTCTGGCCCTGCTTTGCCTCCTGGCTATAAAGTGGGAGAACCGTCGAGCTCCTCGGATGACAGCGAACAGGAGGTGGCGGCCAAAAGAGCAAAAACAAGACACACAGCTGCAGAAAGATCAGCAGACAAGGTGGACAACAAAAAGGCACAAGAAAAAGCTGATGATGGTTTCTTTGGACCAGCCCTACCACCAGGATTCAGGAAACAACAGAGTTCACCAGAGAGACCGCCTGTGCTGGGACCAGCTTTGCCTCCTGGGTTTCGAAGAGCAGCATATGAAAACGATGATGACAATGATGGGGAAGATGGGGAGGATTTCCCGGGGCCTGCCCTTCCTCCTGGCTACCAGGCTGAGTCCTCCAGCAGCGAGGGAGGGGATGATGATGTGATTGGACCCATGCCGCCCAAAGGGCCTATTGAAGACTCCGTGGCTCTGGACTTTGAGCGCAGAGCACGGAGGATGAAAGAGAAGTTGATAGGAGATGACACTCCTGAGGTGCTGGCTAGAGAAACCTGGATGACAGAGCTCCCACCAGAACTGCAGCACATTGGCTTGGGGGCTCGAACCTTCAAGAAGAAGTCAGGTCCAGAGAACAAGGATCGCTCCATTTGGACAGATACACCAGCAGATATTGAGCGCAAGACCAGGGAACATCTTGAGCGAAAGAAGAAGGGTGAGGTGGAGATAGACGATGTCCCACAAGTCTCCAAGAGGGACGTGGAAATGGCAGATAAAGTCTCTAAGTATAACGAGTCTAAACGTGCTGAGTCTCTGGTGAGTATGCACACAAAGAAGATGAAGGAAAAAGCAAAGGAGAAGGCTGACAAACCAGTGGAGAGGAGACCGTTCGATCGAGATGAAGACCTGCAGGTGAATCGCTTTGATGAGGCGCAGAAGCAGCGGCTGCTGAAGAAATCTCAGGAACTGAACACACGATTCTCCCACAGCAGGGACCGAATGTTCCTGTAACAAATTGTCAAAATATTAGAAAGATGTTTGAACGGGCAGACCTTCAGTTACAGTCTGGCTGGTGAAATTTTCATACAGGTTTTGTAAAATATGGACTATGTTTGTACAGATACTCATGTCACAAATGGAGAATTAAATTGGACTAACCTGGACTAAACAGACTATATAGACGTGGCAGACGGGTCCATTTCAGCGAGTGTATGTCAGTGACTGGGTGCAATGGTACAGTATATGTTTTCAAACTGATTCAAGTTGTTATAAAGCAGCAGCCAGTGGAGCTTGCATTTTTTTCAGGAGACACTGAATTAGGGCTGATGATATGGAAGGAATTACTCAAATAAATTACATATTTTCCTACATTGATATGGTTGATTTTGTGAAACACCTTTTGTACAGATTGCTGTAAAATGCATTGTTATGTCGCATGCACTCCCTGTAGCTTTGCAATCTAATCAATATGTCCAATAAACTgcttttgcaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37984 lncRNA downstream 72972 19434943 ~ 19435713 (-) False G28558
TU37983 lncRNA downstream 73470 19420548 ~ 19435215 (-) True G28558
TU37981 lncRNA downstream 90250 19417412 ~ 19418435 (-) True G28557
TU37975 lncRNA downstream 99183 19351997 ~ 19409502 (-) True G28552
TU37963 lncRNA downstream 177170 19330490 ~ 19331515 (-) True G28545
TU38063 lncRNA upstream 17859 19529572 ~ 19531634 (-) True G28623
TU38073 lncRNA upstream 38414 19550127 ~ 19551890 (-) True G28632
TU38083 lncRNA upstream 45965 19557678 ~ 19559314 (-) True G28637
XR_005638844.1 lncRNA upstream 62606 19574319 ~ 19600624 (-) True LOC120556360
TU38116 lncRNA upstream 412022 19923735 ~ 19923998 (-) True G28670
XM_039794272.1 mRNA downstream 153 19500529 ~ 19508532 (-) False gtf2f2a
XM_039794271.1 mRNA downstream 153 19500529 ~ 19508532 (-) True gtf2f2a
XM_039794265.1 mRNA downstream 13272 19459171 ~ 19495413 (-) True LOC120555523
XM_039794294.1 mRNA downstream 150318 19343424 ~ 19358367 (-) False marchf7
XM_039794290.1 mRNA downstream 150318 19343424 ~ 19358367 (-) False marchf7
XM_039796124.1 mRNA upstream 742000 20253713 ~ 20279186 (-) True LOC120556479
XM_039795473.1 mRNA upstream 963914 20475627 ~ 20497725 (-) False tdrd3
XM_039795472.1 mRNA upstream 963914 20475627 ~ 20497725 (-) False tdrd3
XM_039795474.1 mRNA upstream 963914 20475627 ~ 20497725 (-) True tdrd3
XM_039795143.1 mRNA upstream 1409231 20920944 ~ 20990225 (-) True pcdh17
TU37839 other downstream 382309 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other downstream 382309 19123566 ~ 19126376 (-) False LOC120555836
TU37831 other downstream 446535 19059755 ~ 19062150 (-) False LOC120555695
TU37697 other downstream 788666 18719372 ~ 18720019 (-) True G28345
TU37603 other downstream 1088186 18417978 ~ 18420499 (-) True G28269
TU38446 other upstream 2069329 21581042 ~ 21583498 (-) True G28933
TU38813 other upstream 3365918 22877631 ~ 22889042 (-) True G29209
TU38861 other upstream 3404141 22915854 ~ 22919554 (-) False dpep1
TU38988 other upstream 3787829 23299542 ~ 23310746 (-) False spi1b
TU39182 other upstream 4401642 23913355 ~ 23958933 (-) False apba2b

Expression Profile