RNA id: TCONS_00073615


Basic Information

Item Value
RNA id TCONS_00073615
length 5511
RNA type mRNA
GC content 0.39
exon number 7
gene id XLOC_037422
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 48123002 ~ 48135809 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTTAACAATCAGCCAGCAGATGGCATGAACGTGCTCTGAAGCAAAAAACAATCTTGTAAACGCAGAAGAAGAGCAAAACACACATGCAAGTGCACTTTATAGTCGATCTAATGTAGAATATCCGCTAAAATAACAGCAGGAGGCATCGGAAGACCCCCGTAACACATCTGTAACAATAACATTTCGACGCTTCAGGTCAGAAACAGTCATGATACGATTTACATCAGCGTGAAATACACAAACTCAGGCTGATATGAGCAGGATTAATTAatcacattgaggtaaagttggttttatattcgcacattcgttaaTTTTAACgctcattatattgttttatcaCGCTGATTTGTATATTTGATATGAAatcgcatgcaagtatgacttcaaagcAACATTAGcgctatttaactgactgtaaacaatgttgtcctggatgctaatatgatttctctatttagagtttgcaaataatacgtTTCTGAAaggatattattaaggagaaagtcttaatGTGTGAATGTAAGAACTTTACCTTAATATTGATGTAGAAATGAAGCTGAAAGAGCTGGAGAGCTGCCTTCAGCAAGTGGATGGATTTGAGGAGCCCAAAATTCTCCTGGAGCAGTATCCCACCAGCCCTCACATCGCAGGCTGTATGTTGTACACCATCCACAACACATTTGATGACATACAGAATAAACTGGTGGCAGATCTGGGCTGTGGATGTGGAGTTCTGTCTATAGGAGCTGCAGTCCTTGATGCTGGCTTGTGTGTTGGATTTGACATCGATGAAGATGCCTTGGACATATTCAGAGGAAATGTTGAAGAGTTTGAACTGCCAAACATTGATGTGGTCCAGTGTGACGTGTGCTCGATTGGATCTTCTTATGCTAAGAAGTTTGACACGGTCATCATGAACCCGCCGTTCGGCACAAAACACAACCAGGGTATTGACATGCAGTTCCTGCAGACAGCGATTTCTATGGCAACCAGTGCAGTGTATTCCCTTCACAAGACCTCAACACGAGATCACATTCAGAAGAAAGCAAATGACTGGAAAGTGAAAATGGAAGTCATCGCAGAGCTTAGATACGACTTGCCGGCATCATATAAGTTCCACAAAAAGAAGTCGGTTGATATTCAAGTGGACTTCATTCGGTTCACTCCAACGTAAAGGTTTTGGGGGCAAAGGAGAAGATTGTGTTGCTTtgcaaaattttattacaattttttcagtgtttttaaaataaatgttcccAAATGACTGTGTATTTTTGGCGACTGAATACCAATATTTGCTGTAAGTTTTACAAATATACTGTTGGAACATTATTCAGATTTGTGCTTTTCACATTTTTGGCAGTGTAGTGTACAACGTTGAACAGCatcacagtaggaaaaacaataaattaccatcacatatatttttacagttgtattacaaatacaaaatcattcaagtaaatgtaacaatactataaggcagtggttctcaaactgtggtatgtgtaccactagtgttacgtaggcttacttctagtggtacgcggaggaatcactgggtaacaaaagaaaaaataaatacaattttaatcatttgatgcgTACGATAACACAAATGTGATTAGTattggctgttctctaaagcctacgatcaaagcgttgtgcttagaatgtttactttagtgcatcgcgtcatcagctgctaaaaatctGTTCAATTGGTGCAGAACTAGAGAAGGAGGTGCGTGGTGCTGGCAGAGCAGATACTGTACGTGCTAGAGTAGTAATACCCAACCCTTGGACCACAGCCTGGCACTGGTCTATAGATCAACTGGTACCAGACcgcacaaaattatttattttgatataccttttatttagaaaaatgactgtattctcttgTTACATCTCGATCACTTAAGGGCCAAAATTTAACCCATAGGCTAGCAAAATTAGTAAGAAATGCAGCACCAAGCGCTTGCGTATTCCAGGCGTCCCGAGtggaaaacatcttaacttttcagaatgccgcaccACGAGTCGGCATAAGAaccgactgatcagcttcattttttgtatggaatataatttCGTTGAATGAATATGACTCTGCCTTGTTTTCGAACTGTGTAGtactgtagctgcttaatttgaccaactacactattttatttcaatactggtcattatagtggtacttggagagacttttttttttgaggtggtacttggtgaaaaaaaagtttgagaaccacagcTATAAGGAATAAATGCACCTCCTGATTGTAAATATAGTTCTGCTTTTTGTCTGCAAGTCACTGTGCTGAAAGTGAAGTGGTGTTCTGTGTATATTTGGAAACAGTGCAGCCCTTTATCTTCAGGCACAGATAACAGACAAACTGCTTCTAACACACTGTCATGCCTTCACTTCCCACAAAATATATGATCATATAAACAgcaataagtattgaacacgtcatttTTTTCTAGGAATATTATatttctaaagaagttgttaacATGGAATAAAACCagattatggtaaaaaaaaaaaaaaaaaaagaatacaaacatgaaaataaaacaacacaaaaaaaatcagaaaattgttataacaatggaatgacacaaggagaaagtactgaactactgaaacatatttaatattttatataaaaggcttttgtaatgacggcagcttaaagatgcctctcatatggagaatgaagtcgcaTGTATTGCTCAGATGCGAGTTTTTCACAGACCTCAACAGAGTGTAGAAATCTTGacagttctgtgggtctcgtctgtcaaatctttattttgtattttctattgggtttaggtcaggtgattggctgggccattctacagcttgattttctttcactgaaagcatttgagagtctccttgactgtgttttggattattgttttgctgaaatgttcactctggtttcatcttcatcctcctgctaatgtactgaagcagctgatactcatttacaatgaggaagggcggagggctgctgaagaactactgagaaatttcagctgctgtctgggctttcactgcctttctacacatccctttcttcatgtgtttaataattcttccctgtgttatttcattttattgcacataacttcatttgtaaactagatttgttttctttgcacatggatttctttggttgttatcaacactCAGTAAAAACCAACATCCAGTAAAGTTTACAGCATATTTAGAAATACGTTTTCTgggaaaatggtgacatgttcaatacttattttgctTGTGACTGCTAAAGGGGAAAACTTTGAGGTATTATCACATCACGCAAAGGGTAATTTTTTTGCCATTAGCATCTATGACACATAAAAAAGACTCCCGTTCCTCAGACTTGGCTGATGTGGATTTCCTAACAGTTAACTGACTGttttctaatgcaagctgaaGGACAGCACAACTTCACTTTGCTCTGTCATGTTGGTAAAGCCCGCTCTGAGGACCCGGTTTGCAGATGATACACGCACAGACTGTGTGGGATAAAAGAAGCACAGGTCCATGCGTTCAGCATGTGTAACAGCCTGTAACACTGCCTGTACCAGTGCTCAATAAGAATAAGGAAATCACAGATATGCTATTGCGAATTAATGCCTGGACACAGGAGCACTATATTGTTAGATGCCTACTCGAGTTCATATTACACCAGAGTTACTAACCACTACcgcatttttttcagaaatttatTGCAGACCTCTACCTGCAAGCTTTGAAGTATGAAAAAGTcactcaaaagtaacgtaacacATTGCTTTTCATAAAAAGTAACTGAGCAAAGTTACTTTTctgggagtaactcaatattgtaatgcattacctttaagggtaactttccccaacactggtaacCACTGCCATccataatagaaaaaacaaatactatggaggtcaatggttaaaggtttccaaCATAATCAGGTttcaataaatcagttttgttgagttcaacagaacaaaaaactaaatgtCATTTTTGGGCGAAGTACCCCTTTAACTTACCTCAGACTTACTATAATGACTTCACACACCGAACACACAAACGCATCCGTGTGAGCGTGCAGCGGACGGGAGGTTTCCCACTATCTCCCAGCAGTCTATCTCCGGGTCGTACCTCTCTATACTCTGCAGGTACGTTCCCTTAGAGTATGAATATCCTCCTGCTACATAGATGCACCCGTTTATGACAGCCGATCCGCACTCCATCCTTCTCTCCTTCATGGCACACATCTGTCTCCATTCATCTCGCTCGGGGTCGTAGCAGTCTGTGATAGTCGTCTGACCGCCAACCAGATAAAGCTTATTGTATAAGGACACCGAGCAAAGGCCGTACTCTGAAAAGAAAGACATCTTTTgagtttttcacatttaaaaagaaagGAGGAAGAATGTTAATGCCTTTTTTTCCataagattttaaataaatgtttgatgtcatcagaatgtgtctgtgaaattTTGGCTTGTGATACCTAACAGATCAAGTTCTCAAATGTGCCGTTATTTGGGTTTAAACTAAAGCATTCAATTTTTgtgtgtcaatttaaatgcaaatgagctgctgcattCCTGAAGAGGGCGGAGTCTTTACATGCTATTCTGATAGGCACAACAAAACAAGCACATTTTTATGTTGCCAAAATATCAGAAATAACCAGTGGTAAATTAAAGACAGTATATTACAGGATAAGTCTGAAAATGATACATTATTTAGTtaatgagattgacaggcggattggtgcaacCCTCTGGTTATAGGCCAAGTGAACCAATGTTTACACCcaggtcattttaaaatgacaggcaAAGGAGCAAAGGTGGcttttgcaagcagagtggcgcagcgaaagcgtgctgggcccataacccagaggtcgatggattgcaaccatcctctgctaagagaGAATGCATATGTCATGCATGAAAACTAGTCTTTTATGATTTTCGTAGCTCAACAGCgaaaaacaaagtaatcttgaactcgcaaatacagcatcaaggcttagaaagaagtcaaaatagtccttctacagaactgcatttgtgtgttaaccCAGATTAAATTGCCCAATAACTTGCTTGTCCTTCTGCGGTACCCTAATGGATTATGCACTGACCATCTAAGCCACAGGCTGAGTTCGAGTGCCCCGTAGGACAGTCcgaagcagagtggcgcagcggaagcgtgctgggcccataacccagaggttgatggatcgaaaccatcctctgctaagagaGGTTGAGCATGTCATGCATGAAAACCAGTCTTTAATGATTTTCGTAGCTCGACagtgaaaaacaaagtaatcttgaacttgcaaatacagcatcaaggcttagaaacaagtcaaaatagtccttctacagaactgcatttgtgtgttaaccCAGATTAAGTGCCTTGTTCATAGGGCCTCAGTGTAAAGGAGAAGT

Function

GO:

id name namespace
GO:0045727 positive regulation of translation biological_process
GO:0048863 stem cell differentiation biological_process
GO:0032259 methylation biological_process
GO:0042995 cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005634 nucleus cellular_component
GO:0030054 cell junction cellular_component
GO:0098793 presynapse cellular_component
GO:0098794 postsynapse cellular_component
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:1904047 S-adenosyl-L-methionine binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-041010-21 Predicted to enable S-adenosyl-L-methionine binding activity and rRNA (adenine-N6-)-methyltransferase activity. Predicted to be involved in positive regulation of translation; rRNA methylation; and stem cell differentiation. Predicted to act upstream of or within methylation. Predicted to be located in nucleus; postsynapse; and presynapse. Used to study autosomal recessive intellectual developmental disorder-72. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder-72. Orthologous to human METTL5 (methyltransferase 5, N6-adenosine).

Ensembl:

ensembl_id ENSDART00000169733

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075203 lncRNA upstream 800061 47148499 ~ 47322964 (+) False XLOC_037417
TCONS_00075200 lncRNA upstream 806818 46854545 ~ 47316207 (+) False XLOC_037417
TCONS_00074937 lncRNA downstream 245046 48380855 ~ 48381572 (+) True XLOC_037425
TCONS_00073625 lncRNA downstream 546966 48682775 ~ 48687885 (+) True XLOC_037427
TCONS_00075206 lncRNA downstream 557623 48693432 ~ 48755839 (+) False XLOC_037428
TCONS_00075207 lncRNA downstream 571766 48707575 ~ 48713995 (+) False XLOC_037428
TCONS_00075208 lncRNA downstream 571766 48707575 ~ 48755839 (+) False XLOC_037428
TCONS_00073613 mRNA upstream 13828 48108174 ~ 48109197 (+) True XLOC_037421
TCONS_00073611 mRNA upstream 31284 48085039 ~ 48091741 (+) False XLOC_037420
TCONS_00073612 mRNA upstream 33903 48088031 ~ 48089122 (+) True XLOC_037420
TCONS_00073610 mRNA upstream 83061 48007081 ~ 48039964 (+) False XLOC_037419
TCONS_00073619 mRNA downstream 83302 48219111 ~ 48231775 (+) False XLOC_037423
TCONS_00073620 mRNA downstream 83331 48219140 ~ 48227980 (+) True XLOC_037423
TCONS_00073621 mRNA downstream 96762 48232571 ~ 48250827 (+) False XLOC_037424
TCONS_00073622 mRNA downstream 96763 48232572 ~ 48267646 (+) True XLOC_037424
TCONS_00073623 mRNA downstream 279234 48415043 ~ 48668973 (+) False XLOC_037426
TCONS_00073602 other upstream 1691892 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 2301440 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 2582432 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 2788920 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 3058756 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073638 other downstream 1649511 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 1953191 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 2664548 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 3946502 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 7112391 55248200 ~ 55248314 (+) True XLOC_037493

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2729827 True 1625 lncRNA 0.44 1 NW_023494039.1 30501 ~ 32125 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_992 True 72 tRNA 0.58 1 NC_053129.1 218075 ~ 218146 (+)
striped catfish (Pangasianodon hypophthalmus) TU320608 True 375 lncRNA 0.46 1 NC_047611.1 16625984 ~ 16626358 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_992 True 83 tRNA 0.60 1 NC_056703.1 25896139 ~ 25896221 (-)
mexican tetra (Astyanax mexicanus) trnam-cau_93 True 72 tRNA 0.60 1 NW_019172836.1 894177 ~ 894248 (+)