RNA id: XM_039796251.1


Basic Information

Item Value
RNA id XM_039796251.1
length 2652
RNA type mRNA
GC content 0.55
exon number 9
gene id skor1a
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17274978 ~ 17283831 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgagagagagagagagagagaaagagagagaggtgtccATGTGCTTCCTGTCTACACGCCATTCACCTCCCCGGGATCCAGCGGGATGGAGGTCCTGTCTGCTGCACTGAAATAAACTGAAAGAAAGAGTCCAGCTCAGAGTTTCTGCTGTCAGACCGCCTTGTCTGTAACATCGTCCCTCTCTGGACTCACCGGGCCTGCATTTtcatcaatttatttatattaattatcttctttcttttttttttttcttcatccctAACCCTGTTGGAGTGTGTTGTTTATTTAGGAGAGAAagGCTTCCAGGGATGGAGTCGATGCCCGGACAGCTTCGAGACGCGGGACGAGACGCCAGCTCCTCCCCGAGTTCAAAGCAGGACGCACCGAGCTTCTCCGGCCCCAGCTCCCTCAAACCAAACCAAGTGAGTGAGACTGCCCTGTACGGGGTGCCCATCGTATGTCTGGTCATAGACGGTAAGGAGAGACTCTGCCTGGCGCAGATTTCCAACACCCTGCTGAAAAACTACAGCTACAACGAGATACACAACCGCCGGGTCGCTTTGGGCATCACCTGTGTGCAGTGCACCCCCGTCCAGCTGGAGCTCCTGCGGCGCGCCGGAGCAATGCCCATCTCCTCCAGGCGCTGCGGCATGATCACCAAACGGGAGGCCGAGAGGCTCTGCAAGTCCTTCCTGGGAGCGCACAGCCCCCCAAAGCTACCAGAAAATTTCGCATTTGATGTGACTCACGATTGCGCCTGGGGCTCCAGGGGCAGCTTCATACCCGCCAGATACAACAGCTCCAGAGCAAAGTGCATCAAGTGCAGCTTTTGCAACATGTATTTCTCCCCAAATAAATTCATTTTCCACTCTCATCGCACCACAGAGTCCAAGTATCTGCAGCCGGACGCGGCCAACTTCAATTCGTGGAGACGCCACCTGAAACTGACGGACAAAAAACAATCCGATGACATTCACCACGCGTGGGAGGATGTTAAGGCCATGTTCAACGGGGGGAGTAGAAAGAGGACTCTGCCCATGAGCGGCTCGGGAATGTCCTCGTCGATGAAATCACAGGCCTCGTCCAGCCTGGCCCAAACCAGTTCCCCTGAGATCCCTCACAAAACTTTACGGTGCGACGACAATCAGGGAAATAATAACCTGAGTTTGTCGAGCGGCGCACGGACCTACCCAGTCATCCCAGTGCCCAGCAAGAGCTTTGGCATGCTTCAGAAAATCCCCCCACCTCTGTTCTCCCACCACCCCTATGGCTTCCCCAGCTATGGACTGTGTCAGAAAAAGAGCGACGGTTTGCCTGATGCGAACAAAACCAATATCTCTGGTGTGTTTTGGCCTGGCGCGAAGGACGCCCTCTATCCTGCTTTCCCTATGTTTTGGCCTACAGCTGGCGGCCTACCCATGCCGCCCTACCCGGGGTCTCCACCCAAACCTCTCCCAGAGCTGCCAGGCGTCCGGCAGGGAGAGCTCGACCTATCGGACCAAAGCGATCGGGGCGCAAACACACCCAAAGACACCAACCACCACCCTCCCCATCAGCAGGACGCCGGAGAGCGCTGTTCCAGCTCCCAGTCATCATCCACCAGGAACGACGAGGACAAGTCCGGGGACGAGACCCCCCAGAGGAAAATCAACTACATTTCGGCCTTCAGACCCGTAGTCAAAGACGCGGAGACCATCGCCAAACTCTACGGCAACCGAGACAGCTACGGCGCGCGCCCTGGCTACCTGTCCCCGGATTTTATCAGCGAGAGCTCCAGTTATAGATCGATATCACCGGACAGggacagcgcggtggacgaggaCGACGACGACCCGGACGTGGATGTGGAGTCCAACCGAGGACAAGACGAGGAGGAAGCGATCCAGATCTCTCCGGGAGGGGAGCACCATGACTCCCCCGGGCCGGACCGGGTCTCCTCGGGTGCTGAGGAGAGCCAGGAGCAGCCTGCCGCCTCCAGCCCCGCAGCATCAGCATCACCGGAGCACTCCGTGCACACTGGCTCATCAGATGAGGACAGACGGATGCGTAATGGCTCTCCTCTTCATGAAGTGTACGCTCATGAAAAGGACGGCCACGTGCTCCTGAACGAGCCTTCGTCGTTTGTGTCGAAACACTCGAGCAGCCCCCGCAGATCCAACGGTGTTCACCACGTTACTGAAATTCAGAACCAACGCAACGCAACATCCTTTCAGGAGCACAAGGACAGACAAGCAGATGGAGCTTTACGCATCGATATCAGCGTGCATGAAAGAGATTTGGAGAACATGGCTAAAGAGGAATTGCAGAAGCAGCTTGCCGAACAAGTGGAGTTGAGGAAAAAGTTGGAGAGAGAATTTCAGCATTTAAAAGATAATTTTCAGGATCAAATGAAGCGTGAGCTGTCCTACAGAGAGGAAATGGTCcagcagctgcagattgttCGAGACACTTTGTGCAGCGAGTTGGACCAAGAGAGAAAGGCTCGTTATGCAATACAGCAGAAGCTAAAAGCTCATGACGCCCTTCACCATTTCTCCTGCAAGATGCTCACCCCTCGTCAGTGTACCGGAGCCTGCACCTTCAAACCTCCGCTGCTGCCTCCCTAGTGCCCGGCACCACCCTGCACCACCCTGCCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37069 lncRNA downstream 153398 17021921 ~ 17121580 (-) True G27865
TU36964 lncRNA downstream 632169 16638917 ~ 16642809 (-) True G27775
TU36957 lncRNA downstream 715973 16558638 ~ 16559005 (-) True G27768
TU36956 lncRNA downstream 716457 16557533 ~ 16558521 (-) True G27767
TU36913 lncRNA downstream 865042 16409470 ~ 16409936 (-) True G27729
TU37127 lncRNA upstream 9590 17293421 ~ 17294886 (-) True G27909
TU37151 lncRNA upstream 224292 17508123 ~ 17510825 (-) False G27925
TU37227 lncRNA upstream 279842 17563673 ~ 17605770 (-) False G27983
TU37226 lncRNA upstream 279917 17563748 ~ 17566267 (-) True G27983
TU37229 lncRNA upstream 279917 17563748 ~ 17566267 (-) False G27983
XM_039795828.1 mRNA downstream 11916 17200175 ~ 17263062 (-) True pias1a
XM_039795989.1 mRNA downstream 76366 17193513 ~ 17198612 (-) True LOC120556401
XM_039795781.1 mRNA downstream 89238 17173886 ~ 17185740 (-) False LOC120556297
XM_039795298.1 mRNA upstream 12214 17296045 ~ 17370426 (-) True map2k5
XM_039795540.1 mRNA upstream 118921 17402752 ~ 17434673 (-) True smad3a
XM_039796074.1 mRNA upstream 172729 17456560 ~ 17475867 (-) True smad6a
XM_039796209.1 mRNA upstream 208277 17492108 ~ 17495778 (-) True tmem208
XM_039794879.1 mRNA upstream 230843 17514674 ~ 17532546 (-) True LOC120555798
XR_005638870.1 other downstream 1635018 15639769 ~ 15639960 (-) True LOC120556584
TU36517 other downstream 2431073 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 2804633 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 3985714 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 4179212 13069996 ~ 13095766 (-) True G27075
TU37150 other upstream 224292 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 226119 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 226297 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 934291 18218122 ~ 18220550 (-) True G28121
TU37599 other upstream 1098874 18382705 ~ 18383642 (-) True G28265

Expression Profile