RNA id: XM_039796267.1


Basic Information

Item Value
RNA id XM_039796267.1
length 1418
RNA type mRNA
GC content 0.45
exon number 2
gene id senp8
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 16018268 ~ 16021643 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCctggccaatcagagactcaCTCTCTGACTGTGTTGGAGGATGGACCCTGTAGTGCTGAGCTACCAGGACAGCCTGCTGCGGCGCTCTGATGTGTCCTTACTGGAAGGACCTTACTGGCTCAATGACCGAGTCATTGGTTTCGCTTTTGAGTACTTTGCTGCTGAGCGCTTCAGAGTCCTGGGGGAGACCATCACCCTCATCAGCCCGGAGGTCACCCAGTTCATCAAGTGTGCTTCCTGCCCTGATGAGTTGGCCCTATTTCTGGAGCCGCTGGATCTTGCTTCTCGCCACTGGGTCTTTCTAGCCGTTAACGACAACTCCAACCAGAGCGCCGGGGGATCCCACTGGAGCCTTTTGGTCTACCATCACAACTCCAACTACTTTGCACACTATGACTCTCAAAACGGCAGCAATTCGCTGCACGCGCGGCGCATCGCCAGCAAGCTAGAGCCTTTCTTGGGTGCCGGGAGAAAAGCGTTGTTTGTGGACGAGCCGTGCCCATCACAGCAGAACAGCTATGACTGCGGCATGTATGTTATTTGTATCGCAGAGGCCTTGTGTGAGATGGCCAGGGTGGAAGGCTCACCGCGCCTTCCTGTGCAAGTCATCACCCCAGCCTACATCACTCAGAAGAGGGCTGAATGGTGCAGACTGATCCAGAGTCTAGCTCAGAAtgagctctgctgctctctgtctttTCCTTAGCATGTTGATTGCCCCTCATATATGCACAACAGCTGTCAGCCTCTACATATCTACTGCTGGAGCATCTGAATGCACTCCTTGAATACAGTATATAACGACATATGAGGTATATTTCTATTAAAGTCTCTATCATACTCCATAatagaaaaaaaggtttaaaaagagAACGCAATGTTACGGATCTTTAATGATTCATTGGAAACTTGGTGTCATGTTTATGCCTTGTTTATGCACAGCAGCATACGATATGTAAACCTGAACACCAGCATGCCTACAAAGGAATGGACTCATGTACATATTTAGTGAGGATGGAGAATGTCATGTCAAAGAGGAGGCACAGACTTTCATTTCTCCATTGTATTAGTTTGGGGCAAATGTAGAAATGTTTACACAGATTATTGCTCAGggtcattttaaatgaactagaATTGACGATAAGAATGTGAAACTTAACTTTATCTCCTACTTTACATCACGTATTCAGTCTGTCTCTTAGTTTGAACATGCAGTATGTCTACAACTACAAACTTTTagttttgaaatattttaaagaaaattgcTGTGTGAGGGTAAGACATGTATTCTGACTGTATGGGACAGAGGCCAATGTTGAGTGGTATGATATGTTCTCACAAAAAGCAAGTATCCAAGTCATTGTATGCTGATCTAATAAATTTTActgtcacatttttgttgacaaaaTGGTAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36790 lncRNA upstream 122364 15892339 ~ 15895904 (+) True G27632
TU36785 lncRNA upstream 129445 15886918 ~ 15888823 (+) True G27627
TU36771 lncRNA upstream 198899 15818608 ~ 15819369 (+) True G27613
TU36710 lncRNA upstream 471613 15546444 ~ 15546655 (+) True G27568
TU36709 lncRNA upstream 472489 15545491 ~ 15545779 (+) True G27567
TU36835 lncRNA downstream 27236 16048879 ~ 16068425 (+) True G27663
TU36836 lncRNA downstream 34045 16055688 ~ 16068425 (+) False G27663
TU36850 lncRNA downstream 55375 16077018 ~ 16077406 (+) True G27671
TU36851 lncRNA downstream 59869 16081512 ~ 16081872 (+) True G27672
TU36853 lncRNA downstream 109538 16131181 ~ 16132039 (+) True G27674
XM_039795721.1 mRNA upstream 513818 15490399 ~ 15504450 (+) False cpeb1b
XM_039795723.1 mRNA upstream 513818 15490402 ~ 15504450 (+) False cpeb1b
XM_039795717.1 mRNA upstream 513818 15490403 ~ 15504450 (+) False cpeb1b
XM_039795718.1 mRNA upstream 513818 15490403 ~ 15504450 (+) False cpeb1b
XM_039795720.1 mRNA upstream 513818 15490404 ~ 15504450 (+) False cpeb1b
XM_039794735.1 mRNA downstream 280138 16301781 ~ 16312679 (+) True cln6a
XM_039794734.1 mRNA downstream 280139 16301782 ~ 16312679 (+) False cln6a
XM_039794736.1 mRNA downstream 291080 16312723 ~ 16320946 (+) True calml4a
XM_039795542.1 mRNA downstream 389390 16411033 ~ 16412571 (+) True LOC120556141
XM_039794154.1 mRNA downstream 474192 16495835 ~ 16544791 (+) False coro2ba
TU36678 other upstream 531847 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 571876 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 2780449 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 2907929 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 3986540 12031621 ~ 12031728 (+) True LOC120556595
XR_005638756.1 other downstream 1702905 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 2540252 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 3465603 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 3476095 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 3476450 19498093 ~ 19498224 (+) True LOC120556586

Expression Profile