RNA id: XR_005638714.1


Basic Information

Item Value
RNA id XR_005638714.1
length 1833
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120555431
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15818610 ~ 15848699 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

catattaatgttaaaaaacctcataaagtgaaattttcatgccatgggaccattAATGTTTTATACAACCAGGTAATCACTCAATATGCTCTCTGGGCAAATACAATCAATCAACTTTAGAATGCCATTGCCAATTAAACTTGACATAGAcacaaataattgttttttttctccaaaatctGATAGTTATTTTTGGGTTTTCTGAGGTGTTATTGGAGCTGGCTCACCAACATCcttgtttagatttttttccagCTGTGAGCAgctctttcatttcatttcatttcgtTGCTTTGTGGGAGAATATTGTCTACAACAGTACACTCACAAATCTAGTGCTTTTTAGTATGAGTCCTGTCTATTTAGCCATGCTGGTTtcggtcagtccaccactttgattcagactgaaatatcccAACAAACAAATTTTCATCTGCTGACCTTGGTGATTCCGTGACAtcttcctctagcgccaccatgaggtttacatttgttttttttcagtgaaatgtctcaagaATTATTGGAAATTTGCCCCTTTCGGGTTATCctgcacggcagctggattctcacgAGATCACGCTACAATCGTGTGATCACATATCACACGATAATCCATACGTCATGCTTCAAGTAATGCTTTTTGTGTCTGAACTCCCAACTAActgaaccaatcagcgtccGGTGAGGAGCTACTAGCAGCTACGGGCGTGGTTTAGGAGCGTGTGACAGCCGCGACTGTTCGTTCAAAACAACCAGGGGTGTCAGACTGGGAGTGGAAAGGGCCTGAGTGCTCAGGgcccctcatgtgaggaggacCCAAAAAGATGCttgaatgaatagctgtggatgtggggagaGGCCCATAGAATAtgtctttctacagggcccagaacgTTATGCTACGCCCCTGAAAACAACAATGGTGGACGTGATAGACGGATGGTTCATcgaatcacctgccaggtatttttttttaaagtgcctgccctttctaaacagtttccaatgacggcttctcagatcATTCAGTTTATCTCTCAGGACCATGAGGTAAAATTTTCTTATGACCATCTACTGCAAAACTAATTACATTTCTGTCAATCTGTTGTCCTATCCATGCAAAAACAGTTAGTCAATACATTGCAATTTTAAGCTCTTGTGCCGTGCCACTTTTCATGTAATACCACCTGTATTAGGGCACAGGGCACTGCACAAGAGCCTGAAAATCGTGCCCAATGTTCAGCCAATTTCcaacactatttatttctgataATCCCACTTACTGTGCAAATCTTTATATGTGGCTCTTGAAAAGCAAATCACAGTAATCATCTGTCACAAGGTCAGTCCTGCTTTTCCCCCATTCTACTCCTGTCACTCCTTTCAGCCACCTCCTCATTTCCGCAGCACCCTGCAGTGCCATTTTCCACCCATCCACCAGATGCCCTAAGACTTTTCCACTCATCCCAATCAACTGACCCTCTCATTTACCTGCTCACCTGTTTCCACTTTCTCTCATCAGCCCTGCAGTGTATTATCGGCGCATTTCATTTTCCCTGCCAGGTTGCCAGTGTTTCTACATGGCTTGTTTTCCAGCGACCTGAACCTGAATCCTAAACCCTGGAATCTGGAACCTGGAACCTGTACCTGCCTAGTCAGCGCTGGGGAGAATAACAGCAGGTTGCAGTGCCAGAGGTGAGCAAGGTGACAGCAGTGAAGCAGACGTTCGCGTTGCTGCTACTCCATTATCCCTCCAGCAGCTAGCAGAGATGAGCTGTCTGGGAAGAGAGGCCAACGCAGCGCTTCTCGTCTCATCTCCTCCTAATCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36736 lncRNA downstream 233021 15596613 ~ 15596867 (-) True G27594
TU36729 lncRNA downstream 283097 15546578 ~ 15546791 (-) True G27587
TU36724 lncRNA downstream 294551 15534000 ~ 15535337 (-) True G27582
TU36690 lncRNA downstream 324220 15479306 ~ 15505668 (-) True G27552
TU36829 lncRNA upstream 180188 16028887 ~ 16029172 (-) True G27659
TU36855 lncRNA upstream 222870 16071569 ~ 16073508 (-) False LOC120556162
TU36856 lncRNA upstream 225866 16074565 ~ 16074783 (-) False LOC120556162
TU36877 lncRNA upstream 318260 16166959 ~ 16168421 (-) True G27698
TU36904 lncRNA upstream 473264 16321963 ~ 16324191 (-) False LOC120555730
XM_039794921.1 mRNA downstream 42520 15600418 ~ 15787368 (-) False neo1a
XM_039794920.1 mRNA downstream 42542 15600418 ~ 15787346 (-) False neo1a
XM_039794908.1 mRNA downstream 42548 15599975 ~ 15787340 (-) False neo1a
XM_039795206.1 mRNA upstream 8016 15856715 ~ 15872441 (-) True bbs4
XM_039795207.1 mRNA upstream 8016 15856715 ~ 15870911 (-) False bbs4
XM_039795209.1 mRNA upstream 24012 15872711 ~ 15884598 (-) False scamp2l
XM_039795208.1 mRNA upstream 24012 15872711 ~ 15884597 (-) True scamp2l
XM_039794731.1 mRNA upstream 38312 15887011 ~ 16017712 (-) False myo9aa
XR_005638870.1 other downstream 189928 15639769 ~ 15639960 (-) True LOC120556584
TU36517 other downstream 985983 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 1359543 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 2540624 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 2734122 13069996 ~ 13095766 (-) True G27075
TU37150 other upstream 1659424 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 1661251 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 1661429 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 2369423 18218122 ~ 18220550 (-) True G28121
TU37599 other upstream 2534006 18382705 ~ 18383642 (-) True G28265

Expression Profile