RNA id: XR_005638718.1


Basic Information

Item Value
RNA id XR_005638718.1
length 362
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id LOC120555485
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 3382656 ~ 3388513 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGACTGTAGCAGCTGGTAGCACAGAGCTAGCGGCAGAAATGACGTAAAATTGATAAATTACGGACatcgagtggataaatcttggatgtaagcgtttggatttattgctgaacaactccaaaaagaggcacaagttccaggctggatagaaaaccttctgGAAAGGCTACgaagacaacaaagacacccACATGACGGCTAGCTTCTTAGCTTCTAGCTGGAAAAAACGATGCGCccacagaaaaggaaaagacagtGAAGCAGTACGTATCTTCAACACTCAGAGACAAAGTGTAGCAGGCGCTACGaaccggagcaaggactaacctcgcctcataacTAGGCCGTGACAtatatttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33996 lncRNA upstream 2741 3309375 ~ 3379915 (+) False LOC120555484
XR_005638717.1 lncRNA upstream 61242 3317065 ~ 3321414 (+) False LOC120555484
TU33989 lncRNA upstream 64712 3314354 ~ 3317944 (+) False LOC120555484
TU33993 lncRNA upstream 67413 3309375 ~ 3315243 (+) False LOC120555484
TU33995 lncRNA upstream 68961 3309375 ~ 3313695 (+) True LOC120555484
XR_005638719.1 lncRNA downstream 9 3388522 ~ 3389725 (+) True LOC120555486
XR_005638720.1 lncRNA downstream 24499 3413012 ~ 3414535 (+) True LOC120555487
TU34083 lncRNA downstream 74544 3463057 ~ 3463523 (+) True G25380
TU34089 lncRNA downstream 92808 3481321 ~ 3484224 (+) False mmp15b
TU34124 lncRNA downstream 225733 3614246 ~ 3614516 (+) True G25418
XM_039794180.1 mRNA upstream 77168 3280076 ~ 3305488 (+) True slc7a6
XM_039794181.1 mRNA upstream 77168 3280078 ~ 3305488 (+) False slc7a6
XM_039795613.1 mRNA upstream 109478 3250608 ~ 3273178 (+) False adgrg1
XM_039795099.1 mRNA downstream 32690 3421203 ~ 3422406 (+) True LOC120555909
XM_039794972.1 mRNA downstream 92784 3481297 ~ 3518086 (+) True mmp15b
XM_039794595.1 mRNA downstream 235121 3623634 ~ 3724143 (+) True mtss1lb
XM_039794599.1 mRNA downstream 235121 3623634 ~ 3724143 (+) False mtss1lb
XM_039794597.1 mRNA downstream 235121 3623634 ~ 3724143 (+) False mtss1lb
TU33868 other upstream 1299337 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 1539845 1839333 ~ 1842811 (+) True G25173
TU34144 other downstream 396420 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 1181860 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 2645696 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 2663374 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 2664302 6052815 ~ 6052897 (+) True trnal-uaa_1

Expression Profile