RNA id: XR_005638720.1


Basic Information

Item Value
RNA id XR_005638720.1
length 1282
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id LOC120555487
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 3413012 ~ 3414535 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgacgtgagactgggttgggtTGTCAGTTGGTTTGCTATTGTAGCAGGTTGATTGGTCGCAGGTGGTTTCaatcacactcactctctctggaccaatcaggaagtaACTGCATGCTATATAGGCAGGGGGTTTGACCTCTTGACACTTTTACTCTTTGTTGCTGGAAGCACATTTCCGCTTTGGGTCCTTTTGCGTGGTGCAGTCACGGTTGTGCAACAGTGTCTCCCTGTTACAAACCCGATCCTTCCTGTAACGGAACCCGGTTGAGTGTTGCTGCTGGCTCTGTGTAGCTGTACTATCGGCACTGTCGGTGTATTGGTGCAAAGCTCCTTGACGGGGTTGTAAAATTGCTTCGCTTGCGCTGGTATCTGCAATAGCCCCTCCCTTCCCTGCCACGCTGCTGTTTTGTCTCAACTGACTTTTGTTTCAACCACTGTCAACGGGTTGTAACCACACGAGCTCACGCCAGGCTTTGAACGCCTCTACGCGCCTTTCAGCGCCAGGATCTGTTGCCAAAGTGTCCGACAGGGCTGTATTTGAGTGATTGTGACACGGACGATAGCTTTGCCTTTCTTTGGCTTGCCCGTGCTTACTAATGTGTATGGAGATTGGGGTTTATGTTTATGggtttatttgttaaattatgatTAAGtgatttttggttaatttatatttctttttgtttaagtCCTGATAAGACTCATTTCTGTTGAAACTTTATGATTTTATCTGTTAATCTTTTGTTTGGCTCCAGGCAGCTCGGATTAAGTGATCTTTGGTtgatttttatttctgtttaagtTGTGATAACGACTTTCATTTTTGCTGAGACCTTTATGGTTTATTTGTTAATTTTGGTTATTTGTTATGCTCTAGGCAGCTATTTAGACACCTTTGCTGCCTAGATTTGCCTTAGATTGaagtttttcatttatttttggtttgATTCATTTTCCCTCCCCAATAATTGAATGTTCTTCTCCTATAGGTGCTGAGTGCCGAAGGTGGTGGTGTCAGTGTCCCCAGTGGTGGTGTCTCCctcctgtgtgctgtgttttcccCCTTGGTTTATTTTGAGTTTCTCAccactgtgcgtgtgtgtgtgtgttcacgtgTGACTGGGGTGATCCTTCCCTGAGACCCCACACCCTTTGACCCTGTCCCTCCACCGGTAAGGCCTCAGCACTTATTTACCACATTTAGTAGGTCTGGTATTTTAAATAGTCTTTTATATTTGATGTTTTAGTAATTGTATtaataaaatcattgttttTGATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638719.1 lncRNA upstream 23287 3388522 ~ 3389725 (+) True LOC120555486
XR_005638718.1 lncRNA upstream 24499 3382656 ~ 3388513 (+) True LOC120555485
TU33996 lncRNA upstream 33097 3309375 ~ 3379915 (+) False LOC120555484
XR_005638717.1 lncRNA upstream 91598 3317065 ~ 3321414 (+) False LOC120555484
TU33989 lncRNA upstream 95068 3314354 ~ 3317944 (+) False LOC120555484
TU34083 lncRNA downstream 48522 3463057 ~ 3463523 (+) True G25380
TU34089 lncRNA downstream 66786 3481321 ~ 3484224 (+) False mmp15b
TU34124 lncRNA downstream 199711 3614246 ~ 3614516 (+) True G25418
TU34149 lncRNA downstream 401302 3815837 ~ 3816148 (+) True G25436
TU34212 lncRNA downstream 931103 4345638 ~ 4348769 (+) True G25486
XM_039794180.1 mRNA upstream 107524 3280076 ~ 3305488 (+) True slc7a6
XM_039794181.1 mRNA upstream 107524 3280078 ~ 3305488 (+) False slc7a6
XM_039795613.1 mRNA upstream 139834 3250608 ~ 3273178 (+) False adgrg1
XM_039795099.1 mRNA downstream 6668 3421203 ~ 3422406 (+) True LOC120555909
XM_039794972.1 mRNA downstream 66762 3481297 ~ 3518086 (+) True mmp15b
XM_039794595.1 mRNA downstream 209099 3623634 ~ 3724143 (+) True mtss1lb
XM_039794599.1 mRNA downstream 209099 3623634 ~ 3724143 (+) False mtss1lb
XM_039794597.1 mRNA downstream 209099 3623634 ~ 3724143 (+) False mtss1lb
TU33868 other upstream 1329693 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 1570201 1839333 ~ 1842811 (+) True G25173
TU34144 other downstream 370398 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 1155838 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 2619674 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 2637352 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 2638280 6052815 ~ 6052897 (+) True trnal-uaa_1

Expression Profile