RNA id: XR_005638728.1


Basic Information

Item Value
RNA id XR_005638728.1
length 2009
lncRNA type intronic
GC content 0.35
exon number 2
gene id LOC120555539
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6123047 ~ 6125990 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCAGACACTTTGCATTACTTTCTCTATAAAAAGATAAACACTAACATTTTATGACAcaatttgaaatgaaatgtaataCATTCTGAAATTTAACAGCGCATAGTTTAATTTGTCTTCAATAATATACAAGGATCTGCAGTATAGTCTGACTGCTCAATGTACAGTATCATGGAACTTTTTCTATTTAATTGTGTGGTAATTTATATGGAAACTGTAAACAAAGATAATTTGGTAAATTGTGTGGAAGCCCTGTAAGGCAaggtgaaaaaataaaatttgcgaAACCAAGATCAACTTTAAGATTATCTCTCGTGTgatacggaagaggattagggcctcatgtaaaaaaattatttgagttctgagtttaaactcGTAATTCTGAGTGATAGTCAGACTTAAAACTTAGATACAGTAAGTGATTGCAAGAAATTAGTTTTTTCTGCCTCGAAAGATGTACATTGcaattttgaagaaaaaaatgctaGTTTTcaaagttcaagtcaagtcaactttattgtcaattctgcaatatgtgccagacatacagagcaattgaaaatatGTTTGTCTCCGACCCACAGTGCAATAAGGACACGTACGACAAGTATACTATAAAAAAGACAAGgaatatatacaaatatgaTAAAGAAAGATAAGTTATATATACAATtaaaaagataagtaatatgtacaatacagtaatacattctgaatagtgcaaatgtaaggCAAAATCAACGCTGTAACACTGTAAAACTTTACAGTTACTTCttgttctgacattttacaaagTTTAGCTTTATATCACATTGTGGGTCCAAAATAATTACACTAGCTGACAGCATTTTTCCATGGTAACATATTGTTAAATTACAGGCAAGTTGCGTTCTGACTGTAAATTATGCATATACAGTTTAATATTGTTAATACTGCGTTGCACAAGACGGTTTGAAACAGGGGCTAGTGATGTGCGGATCGATACTAAAGTATCGATATTTACGATCCCAACGTCTCCTGCTCTAGTATCGATTCTCATATAAAAAGATCGatatttaaactcagtaatttgGAGTGAGTGTTTATGTTATCATAAGTAACTTGTTGTCACCTGAAAAGTCTGATTATAACCGGTTAGGGGAAGGAACTACTTCTCCTTCCGCCGGTCAGTTGTGTGTGCACTGCGGCTCTGTGACGGAGCCGGCCGCTGCAGCAGCCCTTCTTTAATTTCCCGCTATGAAGACTGCAGACTGCAAAGTGACTATGGCTGACCGCAAAAGGAGTCATGTCTGGCTGTATTTTAGCTGTAAAGACAGCAGTGACGCTGTGTgtggacatttttttatttgtgtgtaatTTTCAACCTGTTTTACTGTACAAGTCTCTGAGATTTtctttataattaaataatatgagAGTAGTTTATTGTCTTGACTTTATGCAgctatagcctactttggaaTTGGTAAGCCTACAgcctacttttttattttactttaaactaTTTGTCACATCACACTACAAATAAAATACGTAAAaagtattggtattggtatcggtatcggcaataCCAGCCTGGGtattacttggtatcggatcgaacAGGAATTAAGTGGTATCGCACATCACTAACAGGAGCATCTGACaactgaagaagaggaggaacgGTCGGAGTGCTTTACTTTTCAATAATGTGCAGAGGGAAGCACGACCAGTGGGCGCCACAGCTGAAGACAACAGTGATGACTATCACCTACATTTCCTTATAAACAGTTTCTTTTCAGTTTCTTTTTGTGATTTCAGATATTTAATTGGAATCGACCCAACCAGTGGCACCAAGATGGTAAAGCTGGACAGCCAAAGACGTAAGAAGGTGCATGAGAAGAAGAGCTCACGTCAATCCTTTTTTAGCTACaatctttatgtttttttgatttaactgtcaaaaaatatttacatgtgGATTGTAACGCTCTATTGATTTTAAtaaaagttttgttttgttgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34434 lncRNA downstream 217380 5905356 ~ 5905667 (-) True G25674
TU34432 lncRNA downstream 237886 5884844 ~ 5885161 (-) True G25672
TU34427 lncRNA downstream 245029 5876253 ~ 5878018 (-) True G25667
TU34404 lncRNA downstream 308363 5814479 ~ 5814684 (-) True G25646
TU34401 lncRNA downstream 315949 5800797 ~ 5807098 (-) False G25644
XR_005638729.1 lncRNA upstream 83904 6209894 ~ 6211078 (-) True LOC120555540
TU34580 lncRNA upstream 127333 6253323 ~ 6311134 (-) True G25759
TU34592 lncRNA upstream 187993 6313983 ~ 6314207 (-) True G25769
TU34610 lncRNA upstream 197287 6323277 ~ 6326642 (-) False ankdd1a
TU34609 lncRNA upstream 197426 6323416 ~ 6326642 (-) False ankdd1a
XM_039794274.1 mRNA downstream 43880 6070600 ~ 6079167 (-) True LOC120555529
XM_039794275.1 mRNA downstream 55821 6060618 ~ 6067226 (-) True LOC120555530
XM_039794276.1 mRNA downstream 72358 6038425 ~ 6050689 (-) True LOC120555531
XM_039794277.1 mRNA downstream 72465 6038425 ~ 6050582 (-) False LOC120555531
XM_039796034.1 mRNA downstream 405614 5680622 ~ 5717433 (-) False LOC120556425
XM_039794280.1 mRNA upstream 19439 6145429 ~ 6153413 (-) True LOC120555533
XM_039794281.1 mRNA upstream 30232 6156222 ~ 6167529 (-) True LOC120555534
XM_039794283.1 mRNA upstream 57642 6183632 ~ 6193536 (-) True LOC120555536
XM_039794282.1 mRNA upstream 108190 6234180 ~ 6241650 (-) True LOC120555535
XM_039794286.1 mRNA upstream 152147 6278137 ~ 6281524 (-) True LOC120555542
TU33895 other downstream 3845956 2275475 ~ 2277091 (-) True G25228
TU33896 other downstream 3847038 2275475 ~ 2276009 (-) False G25228
unassigned_transcript_137 other downstream 4289653 1833321 ~ 1833394 (-) True trnat-agu_3
XR_005638786.1 other downstream 4480699 1588886 ~ 1642348 (-) False LOC120556047
TU33668 other downstream 4665956 1431968 ~ 1457091 (-) False LOC120555898
XR_005638726.1 other upstream 30232 6156222 ~ 6167529 (-) False LOC120555534
TU34701 other upstream 516456 6642446 ~ 6644606 (-) False dok4
XR_005638761.1 other upstream 1206794 7332784 ~ 7344756 (-) False lmnl3
TU34939 other upstream 2018217 8144207 ~ 8146901 (-) True G26071
TU35108 other upstream 2726797 8852787 ~ 8979076 (-) False LOC120555589

Expression Profile