RNA id: XR_005638733.1


Basic Information

Item Value
RNA id XR_005638733.1
length 276
lncRNA type inter_gene
GC content 0.58
exon number 3
gene id LOC120555568
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21142725 ~ 21143190 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGAGGACCACTGTGTCTGCTCATGCCGTTTTAAGGCCAAGAACAACCGGCCTGCCGATTAGCGGAAGATGGTGGCCACCTTTATGTGCTACAACAGGGCCACAGCTGACTGCTTCTACGCCCTCAGCCTGAACGTGGCCCAGTCAAAGAGGATGAGGGAGCATTTCCGCTAGGCCCTCACCCCCTACCAGGAGTCAGGGACCTCGggactggaggaggagagggagtttATGGCGAGGCTGCAAAATACACCAGAGAAGGCCGATCAGGATGAG

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38260 lncRNA upstream 68970 21073541 ~ 21073755 (+) True G28792
TU38243 lncRNA upstream 316248 20826224 ~ 20826477 (+) True G28778
TU38242 lncRNA upstream 345054 20797412 ~ 20797671 (+) True G28777
TU38241 lncRNA upstream 364909 20777543 ~ 20777816 (+) True G28776
TU38206 lncRNA upstream 562610 20579142 ~ 20580115 (+) True G28745
TU38272 lncRNA downstream 178122 21321312 ~ 21321625 (+) True G28804
TU38282 lncRNA downstream 214142 21357332 ~ 21456540 (+) True G28812
TU38321 lncRNA downstream 266462 21409652 ~ 21412834 (+) False LOC120556583
XR_005638869.1 lncRNA downstream 266663 21409853 ~ 21413209 (+) False LOC120556583
TU38322 lncRNA downstream 267863 21411053 ~ 21412834 (+) True LOC120556583
XM_039794835.1 mRNA upstream 449751 20504098 ~ 20692974 (+) True LOC120555780
XM_039796125.1 mRNA downstream 143653 21286843 ~ 21287974 (+) True LOC120556481
XM_039795974.1 mRNA downstream 187963 21331153 ~ 21352064 (+) True nkpd1
XM_039795976.1 mRNA downstream 187963 21331153 ~ 21352064 (+) False nkpd1
XM_039795975.1 mRNA downstream 188703 21331893 ~ 21352064 (+) False nkpd1
XM_039795984.1 mRNA downstream 228967 21372157 ~ 21374142 (+) True trmt10c
TU38234 other upstream 381578 20711104 ~ 20761147 (+) True G28770
XR_005638835.1 other upstream 1622507 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 1644501 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 1644852 19497738 ~ 19497873 (+) True LOC120556587
TU38013 other upstream 1655192 19487246 ~ 19487533 (+) True G28581
TU38307 other downstream 253023 21396213 ~ 21403450 (+) True G28826
unassigned_transcript_140 other downstream 1404011 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 1621529 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 1724530 22867720 ~ 22881366 (+) False ankrd11
TU38851 other downstream 1848947 22992137 ~ 22992502 (+) False LOC120555548

Expression Profile