RNA id: XR_005638758.1


Basic Information

Item Value
RNA id XR_005638758.1
length 2182
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120555818
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 25442301 ~ 25446052 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGGTCTCCCAGAAAAACTTCCCTGCGCCGACTGCAGCAGACGCGGAGGACTTGATTGGGCAAGGGCTGAAGTTTGCCCCACACAGACGGTCAGCTGAGAAGGACTGAGCCTTCAAAACCATGgagctctatttttttttttttgcggaagcaagagctgttggccatcttctacactgctgccatcctccTGCCTTCTCCCCTCTGGCTGGCGCtacagatccctgcacacaaaaaaacgttccataaagTTTTGGAAGTGAAAACTCTGGGGAGGCACTAGCAAAAATTGCCACAGAAGGTGAAGATGAGCGGCAGAGGAGAGACTAAAAACAGCTGCTTGAAGAGACTGCGATCCCAATGGCAAGCTGTTTTGATTGGgattttgatgttgcttttttgTGGAGTGACCAGTGTCAGATAACTCAGATAAATAACCAGCAAAGTCTGGTAGAAGATTTACAGCATATGGAAAAGAACACCAAATTGCAAATAGAAAACAATCAGCTGAAGCTACTTCTGAGCTCCACTCAACTCCAGTATGACCAACTGAAGCTGCTCATAAATGCAACATGGTACAACTTCACCTTGTCTGCTAAAAATAAACAGTTGAGCCTGCTTTTGAAGAACACTTTGCAAGAAAAAAGTCAGTTGCAAGTGGAGAACCAAGTGTTAAAGCAACTTCTTAACTCCACCTGTCAAAACTCAACACTTCTGGGAAATGAGTATGCAACACCATACAACTTCACCTTGTTGTTTGCTGAAAATACACAGCTGAGCCTGCTGTTGAAGAACACATTACAAGGAAATACACAGTTGAGCCTGCTGTTGATGAACACATTGCAAGAAAAAACTCAGTTGCAAGTGGAGAACCAAGTGTTACTTCTTAACTCCACCTGTCAAAACTCAACACTTCTGGGAAATGAGTATGACCAGCTGAAGCTGATCATAAATGCAACACCATACAACTTCACCTTGTTGTCTGCTGAAAATACACAGCTGAGCCTGCTGTTGACGAACACgttacaagaaaaaaacagttttaagtGGAGAACAAAGAGCTGAACCTGCATGGTTCTAAAGTCAACCCTGGAGGAGAACGGACAACTGAGTCTGCTCTCGAGCAAAATATCGCAAGAAAAAACCCAGTTGCAAGTGGAGAAAGAAGAGCTAAAGCAACTCCTGAAATCCACCTATCAAAACTTCACACTTCTGGGAAGTGAGTATGGCCAACTGAAGCTGCTCATAAATGCAACACGGTACAACTTCACCTTGTTGTTTGCAGAAAAAACACAGCTGAGCCTGCTGTTGAAGAACACGTTGCAAGAAAAAACCCAGTTGCAAGTGGAGAAAATGAGCTGAACCTGGTTAAAGTCAACCCTGGAGGAGAACGGACAACTGAAGCTGAGACTGAGTGAATCATTGGACATCATCACCCTGGCATCTGCAGAAAGCAATCAGTTGCGCCTGCTGTTAAACAATGAACAAGAAACCTCCTTGCAGctgcaggaaaaaaataaactccaGCATTCACTCCTTTATTCCAACAAACTGTCCAACATCTGGAAATACTGTGAAAACGACACACTGCAGTGTTCACACTGCATGTCTGGCTGGACCGAACACGGTTCACGTTGCTTCTTGCTATCAAAAGAAATTAAGAAGTGGGAATTTGGTCGCAGTGATTGTCTTGACATGGGGGGTGACCTGGCTATTGTTTTGAATGCCGAAGACCAGACATTCTTGACCAACATGACTCTTCAATATGTAATGGAGAACCCTACAGTAGATTTCCATTCAGCGTGGATTGAGTTGCAGGACATGGTGAAAGAGGGCGACTACATCTGGATCACTGGCGAGAGAATTCAGAAAACTGTAAGTTAGTGGCTGCCCGGGCAGCCAAACAACGCCATAGCAACCTGGGACAAAGAACAGGCAGGCCAGGACTGTATTGCCATTATCCCACCGAAAGTCATTGGAAAGGGTTCGTTGAGATCCTGGGATGACATTGTTTGTGGTGGCGAACGGCACTACATATGTGAGACCATGGCTTTAATTTTGTCCTGACAGATGATGAAGCTGCATGTTGTAGATGTATGGTCGTTAAGACGTGGAGGAAAAGCCACATTTACTTGGGCGCCCAAAGATGTTTCCtttgtttgtatattaataatTTCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39564 lncRNA upstream 4442 25437650 ~ 25437859 (+) True G29790
TU39561 lncRNA upstream 15943 25424909 ~ 25426358 (+) True G29787
TU39552 lncRNA upstream 21795 25417807 ~ 25420506 (+) True G29786
TU39559 lncRNA upstream 22234 25417807 ~ 25420067 (+) False G29786
TU39510 lncRNA upstream 220864 25221046 ~ 25221437 (+) True G29747
TU39568 lncRNA downstream 8616 25454668 ~ 25455139 (+) True G29794
XR_005638778.1 lncRNA downstream 124739 25570791 ~ 25574421 (+) True LOC120555969
TU39644 lncRNA downstream 176137 25622189 ~ 25622452 (+) True G29849
TU39650 lncRNA downstream 178896 25624948 ~ 25637125 (+) True G29851
TU39673 lncRNA downstream 239788 25685840 ~ 25688108 (+) True G29868
XM_039795425.1 mRNA upstream 25515 25407601 ~ 25416786 (+) True ctr9
XM_039795419.1 mRNA upstream 86448 25338788 ~ 25355853 (+) False ampd3a
XM_039795417.1 mRNA upstream 86448 25346900 ~ 25355853 (+) False ampd3a
XM_039795418.1 mRNA upstream 86448 25347501 ~ 25355853 (+) True ampd3a
XM_039795422.1 mRNA upstream 106822 25332984 ~ 25335479 (+) True adma
XM_039795590.1 mRNA downstream 193477 25639529 ~ 25650613 (+) True btbd10b
XM_039795592.1 mRNA downstream 193477 25639529 ~ 25650613 (+) False btbd10b
XM_039795591.1 mRNA downstream 193477 25639529 ~ 25650613 (+) False btbd10b
XM_039795595.1 mRNA downstream 193479 25639531 ~ 25650613 (+) False btbd10b
XM_039795594.1 mRNA downstream 193479 25639531 ~ 25650613 (+) False btbd10b
TU39283 other upstream 987424 24451312 ~ 24454877 (+) False sox6
TU39277 other upstream 987424 24451374 ~ 24454877 (+) False sox6
XR_005638781.1 other upstream 1133022 24235724 ~ 24309279 (+) False plekha7b
TU39086 other upstream 1710595 23727012 ~ 23731706 (+) True G29433
TU38916 other upstream 2305274 23136732 ~ 23137027 (+) True G29292
XR_005638876.1 other downstream 518627 25964679 ~ 25964758 (+) True LOC120556589
XR_005638875.1 other downstream 520125 25966177 ~ 25966255 (+) True LOC120556588
TU40247 other downstream 2019726 27465778 ~ 27467021 (+) True G30295
TU40331 other downstream 2029103 27475155 ~ 27486736 (+) False ogfod1
TU40340 other downstream 2041625 27487677 ~ 27488791 (+) True G30366

Expression Profile