RNA id: XR_005638762.1


Basic Information

Item Value
RNA id XR_005638762.1
length 845
lncRNA type intronic
GC content 0.39
exon number 3
gene id LOC120555849
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7632831 ~ 7634497 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTCAGACATAGCTGACACAGAACTCttggaaaaagtcaaaaagATTCTGTGAAGGACTGAAAACTCTTTGGGTTCAGGACCAAATACGACGACATCCAGACAGCTTTCGACCCCTGTTCTGCTATGAGCCGAACACACTGACTGCTGACCAGGTGGATGATCTTTTCAGCATTCGTCTCTCTCCAGAAGGGAGCAACAAGAGAGCTGCTGACGAGATGGTCGTTACTTTCTGGAGGGACTATCTCCAAAATGCAGAGGaaGAAGAAGGGCCATCCAAACTAGAGAAGATATTGGCCTTCACAACTTGAGCATCTGACCAGTTCATTCACAAAGGAGATGATGGCTTCTCTACATCAATGTTCCCTCTTGCCAACACATGTGTTAACTGCATCAACTTGCCACTACATGTGTCTTACCAACTGTTCAAGGAGAAGTTTGACTTTGCATTAGGGAACACATATGGGTTTGGCAGGGCATGAACATGTCATGCTCTGAAaactttttctgtctgtgtctcactttctctgtttgtctctacctttctgcttgtctgtctgttttctgaaaaaagtttcaaacaagagttattattttcatttctgAATGCCGTATGCAATATAActtatgtattttatatagtTTCACCACGATTCAGTTGACTCAGTCAGCCTatgttttaaaacatatttacattttaacggCATGTTTCATATTTTTACCAAACTTTTTACcaaatgttaatttatttttcataaaatgttttACGTTTTAACAAAACTTTAATTCACAGAATACACTGCACAAGtgaagaaaacattttaacaaaccTTAACATAACTCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638763.1 lncRNA upstream 6 7630122 ~ 7632825 (+) True LOC120555850
TU34800 lncRNA upstream 295579 7330710 ~ 7337252 (+) True G25950
TU34791 lncRNA upstream 334130 7298499 ~ 7298701 (+) True G25942
XR_005638846.1 lncRNA upstream 587670 7042183 ~ 7045161 (+) True LOC120556370
TU34746 lncRNA upstream 607070 7023866 ~ 7025761 (+) True G25902
TU34815 lncRNA downstream 31299 7665796 ~ 7673941 (+) True G25959
XR_005638768.1 lncRNA downstream 78802 7713299 ~ 7716158 (+) True LOC120555855
TU34885 lncRNA downstream 200406 7834903 ~ 7835181 (+) True G26025
TU34888 lncRNA downstream 212004 7846501 ~ 7846739 (+) True G26028
TU34931 lncRNA downstream 478689 8113186 ~ 8113391 (+) True G26063
XM_039794983.1 mRNA upstream 32472 7354877 ~ 7600359 (+) False adamtsl3
XM_039794993.1 mRNA upstream 302129 7317909 ~ 7330702 (+) True LOC120555848
XM_039794992.1 mRNA upstream 302129 7317911 ~ 7330702 (+) False LOC120555848
XM_039795971.1 mRNA upstream 341961 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795115.1 mRNA downstream 141136 7775633 ~ 7783499 (+) True LOC120555922
XM_039794987.1 mRNA downstream 304715 7939212 ~ 8069667 (+) False efl1
XM_039794985.1 mRNA downstream 307063 7941560 ~ 8069667 (+) False efl1
XM_039794984.1 mRNA downstream 307140 7941637 ~ 8069667 (+) True efl1
XM_039794986.1 mRNA downstream 307140 7941637 ~ 8069667 (+) False efl1
TU34538 other upstream 1343055 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 1343055 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 1344754 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 1366123 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 1579934 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 1119204 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 1434232 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 1932334 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 2212780 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 4397124 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile