RNA id: XR_005638764.1


Basic Information

Item Value
RNA id XR_005638764.1
length 1862
lncRNA type inter_gene
GC content 0.50
exon number 14
gene id LOC120555851
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7794782 ~ 7831623 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACTTTCTCAGCAGCATTTTCTGAATACCAGAGGTGCTTCAGTTTACAGTCAGACTACTGGAAGCCGGAGGAGGAGCCACACTAAGTACCTGTCACACATCCGGAGGAACAGCCTGGAGGTGGAGGCAGGGTCGCCCCACTGTGGAGTTACGCCCCACTCCACCCCCCACTAGAGCACAGCAGCCAGACCTAAAGACAGAATGAGAATGGACGACGTGTTGGAAGTCAAATATCCAAAAACATTCAGCGTTCACCGAGAGCTGAAACACTTGTCAATATCCAGCACAGACTTGAATCAAGATTGCAGTGTCTATAattaaaGTTCTAAGTCTGGCAAGCCATACACCCATCCCCTCACATATTCAGCCTTCACTCCATGGCTTGGTGAGGCTGTCAGAATTAATGATCTTGTCCCAAAGACTGAGATTCTGAAAGGGTTGTCTCCAAAGGACCAAGCAACAACTTCAGGGACTGCCTCTGCCATAGATGAAGACACCATATTACGAGTACTGGATTCCAGACCACTGAACTGGTATGTGAAGACGATTTTGCAGGAGATGCATCCTGGGATATTTTGTGTGATGGTGATTTTGCAGCTGAAGAAACAGAAGATCATCCTTGGTGCAGTTTTGACTGTATTGGGGTTCCACATCTGGAACATATGGGTGGTAGATCGGGCGTCTTAGACACACAGGTTGATGGTGTGCTGGATAGCACCAAACCACCTGACAAGGTGGTGGGTGTTCTGGGGGGACGCAACGTAACTAGATGAGATTTCAAGACTCTCGGATTTCCGGAACTGTTGGAGTTCACAGTATGGATTGCTTACAGAATGGATTTTTACACTGAACTCAGTTGACATTAATCTTTAATTCTATCTGTTTTTGTAGATTGCCAATTGTTGCCTGCAGCTCATTTGAGAAATTGCCAGGGACAAGGGAAAGGACGTGTATGCCGAGGATGCCTTTGTGGTGTCAACTTGGCATGCCCTCTTCAGGAAGACGCGATGCAGAGTCTCCCTCATGACGCAGGATCCAAAGATTTCTCCTCCTTTTCCCTGTGTGGAAACCGGGGCAGTGGTTCTTAAGTACTTATATAATCGTTAGGGACAGACAAGGCCACGAGGTCCCTGATTCAGTGGTGGATGCTGAACGCCTGCAGCTTTATCGTGAAGCGGAATGCTGCCCTGCATTGTGTACGAGATCTGAAGTGACCCGGAACTGGGGTCAGAGGGGGGTGAGGCAACCACTGCGTCCTGGAAATGGTATCCTTTGATGAATGACGCAATTGGTGACAGGCCGTCGGCAACGCTGCCTGTCCTCATTGCCTCATCATGCCAGGACGTGGCGGTTGTGGAACCCCCCTCGTTGGTGACCCCAGAAAGAGACCTAGCCACGGCTTCCGCGGCATCCACTCCAAAACGGAGGCGGGTGGATGTTGCGGAGGCCATGAAAGAGTTACAAGAGAAGGAGCTGTTTTACGAACAGGAGATTATGAAGATGGAGGCGaaggcaagagagagagaggaagccagagatgagagagagaagagtcgGCACCGCAAGGCTGTGCAGAGGGACGAACGCCATTTTaaggagatgagaggagagacAATGAgatgagggagaggagaggagaggcgaGACAGGGAGCATTGCAACTTCAAAGAGGGAACTATTACATACATTGTCTCCTTGCCGGAGCAACCACAGCATTGCTTCCAAATCATCCAAAATTGGAGAAGCTGCCAAAGGCCCTGGAAGTTGATGAACAGGGACCATGACTTACAAAATGACTCGGTGTCATGTGGAGTGTTCTCAATAATGctctgtttcagactgataactccggttcaggctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638767.1 lncRNA downstream 824 7791810 ~ 7793958 (-) True LOC120555853
TU34868 lncRNA downstream 21936 7772366 ~ 7772846 (-) True G26008
TU34865 lncRNA downstream 55394 7739039 ~ 7739388 (-) True G26005
TU34808 lncRNA downstream 465125 7328707 ~ 7329657 (-) True G25955
TU34781 lncRNA downstream 510000 7281854 ~ 7284782 (-) True G25933
TU34886 lncRNA upstream 4275 7835898 ~ 7836325 (-) True G26026
XR_005638766.1 lncRNA upstream 68866 7900489 ~ 7902217 (-) True LOC120555852
TU34905 lncRNA upstream 76370 7907993 ~ 7908261 (-) True G26045
TU34938 lncRNA upstream 302525 8134148 ~ 8191741 (-) True G26070
TU34954 lncRNA upstream 396282 8227905 ~ 8228480 (-) True G26086
XM_039794989.1 mRNA downstream 450026 7330708 ~ 7344756 (-) True lmnl3
XM_039794988.1 mRNA downstream 450027 7330708 ~ 7344755 (-) False lmnl3
XM_039794980.1 mRNA downstream 488452 7304084 ~ 7306330 (-) True LOC120555843
XM_039795112.1 mRNA downstream 742305 7045853 ~ 7052477 (-) True LOC120555919
XM_039795925.1 mRNA downstream 752641 7028566 ~ 7042141 (-) True hdgfl3
XM_039795142.1 mRNA upstream 662730 8494353 ~ 8496635 (-) True LOC120555934
XM_039795362.1 mRNA upstream 798985 8630608 ~ 8697622 (-) False il16
XM_039795361.1 mRNA upstream 798985 8630608 ~ 8697622 (-) True il16
XM_039794376.1 mRNA upstream 901796 8733419 ~ 8737410 (-) False tlnrd1
XM_039794378.1 mRNA upstream 927978 8759601 ~ 8979144 (-) False LOC120555589
XR_005638761.1 other downstream 450026 7332784 ~ 7344756 (-) False lmnl3
TU34701 other downstream 1150176 6642446 ~ 6644606 (-) False dok4
XR_005638726.1 other downstream 1627253 6156222 ~ 6167529 (-) False LOC120555534
TU33895 other downstream 5517691 2275475 ~ 2277091 (-) True G25228
TU34939 other upstream 312584 8144207 ~ 8146901 (-) True G26071
TU35108 other upstream 1021164 8852787 ~ 8979076 (-) False LOC120555589
TU35186 other upstream 1463445 9295068 ~ 9296746 (-) True G26298
XR_005638773.1 other upstream 3645141 11476764 ~ 11510299 (-) True mtfmt
XR_005638741.1 other upstream 3811608 11643231 ~ 11669155 (-) True LOC120555651

Expression Profile