RNA id: XR_005638768.1


Basic Information

Item Value
RNA id XR_005638768.1
length 204
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id LOC120555855
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7713299 ~ 7716158 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGACTCTTctcatcattgtcatcatctCTGTGCTGGCGCTCACGATCACCTGTATTCGGAGGAAGTGCAAACCCAACGGTTCCACTGGAGGAAACTCAGATGGCATGAACTTGGAGATTCCTCAGGCTGCCCCTGATTTCTCCTACGAGAACTGTCCTCCAGTCTTCACCTTGGAAAACACCTACCAGAGCATCGATCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34815 lncRNA upstream 39358 7665796 ~ 7673941 (+) True G25959
XR_005638762.1 lncRNA upstream 78802 7632831 ~ 7634497 (+) True LOC120555849
XR_005638763.1 lncRNA upstream 80474 7630122 ~ 7632825 (+) True LOC120555850
TU34800 lncRNA upstream 376047 7330710 ~ 7337252 (+) True G25950
TU34791 lncRNA upstream 414598 7298499 ~ 7298701 (+) True G25942
TU34885 lncRNA downstream 118745 7834903 ~ 7835181 (+) True G26025
TU34888 lncRNA downstream 130343 7846501 ~ 7846739 (+) True G26028
TU34931 lncRNA downstream 397028 8113186 ~ 8113391 (+) True G26063
TU34943 lncRNA downstream 500828 8216986 ~ 8217378 (+) True G26075
TU34957 lncRNA downstream 533901 8250059 ~ 8250273 (+) True G26089
XM_039794981.1 mRNA upstream 42498 7354877 ~ 7670801 (+) True adamtsl3
XM_039794983.1 mRNA upstream 112940 7354877 ~ 7600359 (+) False adamtsl3
XM_039794993.1 mRNA upstream 382597 7317909 ~ 7330702 (+) True LOC120555848
XM_039794992.1 mRNA upstream 382597 7317911 ~ 7330702 (+) False LOC120555848
XM_039795971.1 mRNA upstream 422429 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795115.1 mRNA downstream 59475 7775633 ~ 7783499 (+) True LOC120555922
XM_039794987.1 mRNA downstream 223054 7939212 ~ 8069667 (+) False efl1
XM_039794985.1 mRNA downstream 225402 7941560 ~ 8069667 (+) False efl1
XM_039794984.1 mRNA downstream 225479 7941637 ~ 8069667 (+) True efl1
XM_039794986.1 mRNA downstream 225479 7941637 ~ 8069667 (+) False efl1
TU34538 other upstream 1423523 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 1423523 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 1425222 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 1446591 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 1660402 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 1037543 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 1352571 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 1850673 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 2131119 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 4315463 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile