RNA id: TCONS_00073621


Basic Information

Item Value
RNA id TCONS_00073621
length 2326
RNA type mRNA
GC content 0.49
exon number 8
gene id XLOC_037424
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 48232571 ~ 48267646 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGAAGCCAACAGGAACCTTGACCATGATACACAAGTCTAGTGTTTTACctttcagataataaataaaacactgctCTTTCATGCAGACCCAGCAGCTGAACGATAAAGCCGAGCAGCAGCGCATTTCTGCGGGTCTGTGAGCTCCGGTAAAGCCGTTTGTCCTCCAACACGTGGAGCTCCTGCAGGTTACGTGTGTCATTATGTCATGATGAAAGACTGACAAAACTGATGAAGTATGTGGAGTGCATCCTGACATCTGCCATCCTCTGCCATGCTGCGGCTGCGATTGTTTCCGGGACGTTCCCTGCGGCCGTTTCACCGTCAGGCCGTCCTGCAGGATCCGGTGTTGGAGCACTTAAAGGCCTGTTCCTCCGAAGAGCAGGTATTTAATGTGGTGGGCAGAAACAAAGCCAAGCTGTCGGTCGGCCATGTGAACTGCGCTATTGGCCTGCTCTGGCAGTTTCAGATCGAGCGGCCGGAGATGCTCAGGACTTTAAATCTGATCCAGAATCACCCGCAGTTCCTGACGCTTCGAGTTCTGGCTGAGAACAAGATCAGCCTCATGGAGGACTGCGCTCTGGTGGACACGCTTTATAACGTGCTCAGGCTCAAAGTGGAGCATCATGACACTCTTGTGCAGCAGCTGGTGACGGAGGCTTGGAACCGACTGGAGAGATTGCCGATGGGAACACTTTCAAAGTTTGCAGTTTGCCTGAGCGACATGTTCCTGCAACACAGCCCGCTGATGGGTCACATCACTCAGATCGTGAGCCAGAGACTGGACACCATTCAACATGCCAAAGTCCTCACACCACTGATGGTCAGTATCTACGCCCTGGTGTCGCCTCAACTGCGTGATTCAATAATTAAAAGAGCAGACACCCTATTGGACCAGATGGACCCGTTTCGCTTCAATAACCCCAGACGAGTGGTGCAGTTCTTCAAAAACAGCAGATACATCCACAAACCCCTGCTGGACAAATGCAATCAGCTCTTCCTGCAGAACATTGATCATCTGGACACGGATGCCATCGGTATCATTATGGGACTGTATCACACTTTGCAGTACAGTAGCAGTTATTTTAAGGTGGCTGTGAAACAGAGACTGATGGAGCTGATGGATGGAAAAACTGATCCGGATGTTTTCACCAAACTTTTCTCTTATTTGGGACCCATAGCAGGGCAAGGGGTCAGAGAGGAGTTAGAGAGGACTGCGCTTCTATTGGCTGATGAGCTGAATTCCCAGCAGGCTTTAGTTGTGCTGGAGGCCATGGAGGATATGCAGTGCAGGAACCTTCAGCTGATCAACAAgATGGAGTCGGTACTTTACAAAAATCTGGAAACCTATCGGCCACTGGAAATCACTCGAATTACTCAAGCGCTTGTCCTGCTGCACTGCCAGAATCCCGACATCCTCTCCAGACTGAAAACCAAACTGCTTCAGTGAGTGTTTCCAAAACCACAGAGATCTGTTCagtcactagcccctttcacacatacagaccttttctgAAAATTAcaggcaattttccagaaagggatCATGtctgaacaggccctttttgaaaatacagataaattcattccggcaattttccagaaagagaagttgtaacattaccggtaatttgccggaatgctgcgctgtgtgaacagagaaggaagattgccggaaagattGGGTTAATGCTTAAAATGTGCTGACGTGaaacgtctactccagccaatcagaacattcagacgcattcacatccatgcttataaatataaaagcctttgaatatttttccagacacattcagctgcaagttgttagtcagataacgtatatgttccttcttaatgccaactgtgtaaaaaatattggTAAAATGCTTATGTtaaactgctgtttgtttacctttaagctctgctttagttgcttgacgcgtgtgcatGTGAACAcataggacacacacacacatattatgaataTCTCAACATCTGAAAACTTATCCTTGCAcataatttgtaatgtaAGTCTGGGAACaaatccaacccgggctcattgtggaaacgtagccccgcggacgtttctgcggaccgcgagatacgtcccggaaggtacgtattcgagcgggtttttttttcgcggatccgcgagaggccgctgtgtgcgctttttcgcgtctcgggtgcCTCTCGGGAGCgagcgccgttcgcgcccgcgctgttcttgtgcgaaaagccgccggatcggccgacccggccgccctcctcctcctcctcctcctcctcctcctcctccttccctaaacccaagcgacggtttgcaaaagccgtcc

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0004672 protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1833 Predicted to enable RNA binding activity. Predicted to be involved in mitochondrial RNA processing and regulation of mitochondrial mRNA stability. Predicted to be active in mitochondrial matrix and ribonucleoprotein granule. Orthologous to human FASTKD1 (FAST kinase domains 1).

Ensembl:

ensembl_id ENSDART00000040229

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075205 lncRNA upstream 103244 48123162 ~ 48129327 (+) False XLOC_037422
TCONS_00073618 lncRNA upstream 103244 48127608 ~ 48129327 (+) True XLOC_037422
TCONS_00073616 lncRNA upstream 104876 48123162 ~ 48127695 (+) False XLOC_037422
TCONS_00075203 lncRNA upstream 909607 47148499 ~ 47322964 (+) False XLOC_037417
TCONS_00074937 lncRNA downstream 130028 48380855 ~ 48381572 (+) True XLOC_037425
TCONS_00073625 lncRNA downstream 431948 48682775 ~ 48687885 (+) True XLOC_037427
TCONS_00075206 lncRNA downstream 442605 48693432 ~ 48755839 (+) False XLOC_037428
TCONS_00075207 lncRNA downstream 456748 48707575 ~ 48713995 (+) False XLOC_037428
TCONS_00075208 lncRNA downstream 456748 48707575 ~ 48755839 (+) False XLOC_037428
TCONS_00073619 mRNA upstream 796 48219111 ~ 48231775 (+) False XLOC_037423
TCONS_00073620 mRNA upstream 4591 48219140 ~ 48227980 (+) True XLOC_037423
TCONS_00073615 mRNA upstream 96762 48123025 ~ 48135809 (+) False XLOC_037422
TCONS_00073614 mRNA upstream 100936 48123002 ~ 48131635 (+) False XLOC_037422
TCONS_00073617 mRNA upstream 101026 48123224 ~ 48131545 (+) False XLOC_037422
TCONS_00073623 mRNA downstream 164216 48415043 ~ 48668973 (+) False XLOC_037426
TCONS_00073624 mRNA downstream 205082 48455909 ~ 48672254 (+) True XLOC_037426
TCONS_00073628 mRNA downstream 504811 48755638 ~ 48816031 (+) False XLOC_037428
TCONS_00073629 mRNA downstream 510628 48761455 ~ 48817119 (+) True XLOC_037428
TCONS_00073630 mRNA downstream 568453 48819280 ~ 48831418 (+) False XLOC_037429
TCONS_00073602 other upstream 1801438 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 2410986 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 2691978 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 2898466 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 3168302 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073638 other downstream 1534493 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 1838173 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 2549530 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 3831484 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 6997373 55248200 ~ 55248314 (+) True XLOC_037493

Expression Profile

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