RNA id: XR_005638782.1


Basic Information

Item Value
RNA id XR_005638782.1
length 584
lncRNA type inter_gene
GC content 0.52
exon number 4
gene id LOC120555993
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18004828 ~ 18181201 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAGGTCACAGATGCCAGCTGGCTAAGCCCCTTAGCTTGTGACCAGAAGCACCCTTGACGTGATGGGACTCCTGATACTGACATAGAAAAGCTTACTACACCTACACCTGGCTGTCTAAGCTCACTACCGCTCTCCTGCCAgtGACCACCTGGTGCTGCTACTGGTTTCTCGATTTTGGATTATCCCGCATAACAATGGGCCAAAGGACAGTTTGGACCAGTTCCACTCCTGAGTTGCCAGGGACCGCTCTGCCTCTTGCCCTTCAGAGACAGTGGCTCTCCTCCCCATCGTGCACACATGGACGCATGGCCACTCTGAACTTTTGTTAATACACCTTTAAAACCTGAACTACAACACACCAAGGAGCGGGCTCGCTGAGAAGTAAATGAGGGACGCTAGAAAGCCGAACCAGAGCGGAGGTCGTCTCGACTAGGGCCTGGCTTCAGAACGCGAAACGAAGCAGCGgctgggAGCTCATCACTTTCTGTCAGTGATACAGTAACCTGTTGCATCTCAGATGGGATTATAGGCTTTGGTGAGTGTATTTAGAGCAGGAAATGAGGGTCATGCAAGtgtgttgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37361 lncRNA upstream 85632 17918900 ~ 17919196 (+) True G28083
TU37335 lncRNA upstream 115611 17888761 ~ 17889217 (+) True G28065
TU37334 lncRNA upstream 115611 17888850 ~ 17889217 (+) False G28065
TU37336 lncRNA upstream 128655 17871746 ~ 17876173 (+) True G28066
TU37215 lncRNA upstream 177918 17825864 ~ 17826910 (+) True G27977
TU37466 lncRNA downstream 263615 18444816 ~ 18445296 (+) True G28163
TU37504 lncRNA downstream 426104 18607305 ~ 18609878 (+) False G28195
TU37505 lncRNA downstream 426104 18607305 ~ 18615809 (+) True G28195
XR_005638784.1 lncRNA downstream 665068 18846269 ~ 18847406 (+) True LOC120556026
TU37774 lncRNA downstream 872923 19054124 ~ 19055004 (+) True G28393
XM_039795255.1 mRNA upstream 116104 17886241 ~ 17888724 (+) True LOC120555992
XM_039795345.1 mRNA upstream 134312 17854838 ~ 17870516 (+) True myef2
XM_039795346.1 mRNA upstream 134312 17854838 ~ 17870516 (+) False myef2
XM_039794856.1 mRNA upstream 181332 17762238 ~ 17823496 (+) True fbn1
XM_039795257.1 mRNA downstream 4700 18185901 ~ 18236296 (+) False dmxl2
XM_039795258.1 mRNA downstream 4700 18185901 ~ 18236296 (+) False dmxl2
XM_039795259.1 mRNA downstream 4700 18185901 ~ 18236296 (+) False dmxl2
XM_039795262.1 mRNA downstream 4700 18185901 ~ 18236296 (+) True dmxl2
XM_039795260.1 mRNA downstream 4700 18185901 ~ 18236296 (+) False dmxl2
XR_005638756.1 other upstream 262094 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 2518407 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 2558436 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 4767009 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 4894489 13109757 ~ 13110339 (+) True G27086
TU37478 other downstream 380694 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 1306045 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 1316537 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 1316892 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 1331155 19512356 ~ 19520218 (+) False ercc3

Expression Profile