RNA id: XR_005638800.1


Basic Information

Item Value
RNA id XR_005638800.1
length 593
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id LOC120556106
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 12587166 ~ 12592629 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTGCATGGTGCATGTGTAGATGAGAAAAGTAGGTCAGAAATCAGAAAGCTGAGAGATAAGCTGAACACGGATGTAAAACAGGCGATTGATGAGCTGCGACTTCAAGTAGAACTCCGTAGAACTGTTTAGAGCTGTAAACAATTGATTTCCCGGCTGGGTTTTTTAGAGTCCTTCAATTGGGTCCTCAGTCCTGGGTTCCTCTACCATCTTCTGCTGTCATCCATCTGCATCTTCATCCTGGTTGCTACTCACCTTCAGGAAAGGGATCATCCACGTCCACATCTCCATATCTTTACCATTGCAATACTCACCTTGGACATTCACTGTGGAAGAGGGTGgtgcaatcctgcgggtgaAAAACGCTTGTGGAAGCAGCTGAAAATGAAGTATAAGAACATAGTTCAAACAGCCAACAGAAAGAAGGCAGAGGCCTGAAAAACTGGTGGAGGACCAGCACCACCACCTCTAACAGAGGCAGAGGAGCTGGCCCTGAGCCAGAATGAAGGAAGGCCAGTGGCTGAAGGAATCCCTGGAGGGAGCTCTTCCTCTGAGCCAGCCACATCACAGGACACAAGTGCCTTCATAAGATGA

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35989 lncRNA upstream 16655 12570231 ~ 12570511 (+) True G26975
TU35981 lncRNA upstream 23941 12562808 ~ 12563225 (+) True G26967
XR_005638839.1 lncRNA upstream 91004 12495645 ~ 12496162 (+) True LOC120556331
TU35948 lncRNA upstream 206514 12380329 ~ 12380652 (+) True G26939
TU35930 lncRNA upstream 303534 12283382 ~ 12283632 (+) True G26922
TU35994 lncRNA downstream 6320 12598949 ~ 12599482 (+) True G26979
TU35998 lncRNA downstream 7012 12599641 ~ 12600287 (+) True G26980
TU36002 lncRNA downstream 46103 12638732 ~ 12638986 (+) True G26984
TU36012 lncRNA downstream 76247 12668876 ~ 12669301 (+) True G26994
TU36016 lncRNA downstream 80147 12672776 ~ 12674123 (+) True G26998
XM_039794273.1 mRNA upstream 24613 12556047 ~ 12562553 (+) True LOC120555527
XM_039795938.1 mRNA upstream 674444 11903272 ~ 11912722 (+) True lto1
XM_039794955.1 mRNA upstream 1455694 11129921 ~ 11131472 (+) True LOC120555826
XM_039794952.1 mRNA upstream 1466051 10934633 ~ 11121115 (+) False minar1
XM_039795800.1 mRNA downstream 473323 13065952 ~ 13071332 (+) True LOC120556313
XM_039796119.1 mRNA downstream 496906 13089535 ~ 13091435 (+) True LOC120556474
XM_039795868.1 mRNA downstream 551878 13144507 ~ 13176403 (+) True si:cabz01068815.1
XM_039795869.1 mRNA downstream 568501 13161130 ~ 13176403 (+) False si:cabz01068815.1
XM_039795643.1 mRNA downstream 612210 13204839 ~ 13208335 (+) True kbtbd13
XR_005638880.1 other upstream 555438 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 2727166 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 2982730 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 3431823 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 3826865 8753701 ~ 8760301 (+) True G26205
TU36106 other downstream 517128 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 642606 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 2848848 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 2882535 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 5131919 17724548 ~ 17742734 (+) True LOC120555788

Expression Profile