RNA id: XR_005638825.1


Basic Information

Item Value
RNA id XR_005638825.1
length 246
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id LOC120556208
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11725618 ~ 11728296 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAACTCCAAAATTGGAAAGGCATTTTGGAGGTCAGCAGCAACTTTTAAAGCAGCTTCACGGCAGTCTTGAGAAAGGGTTTCAAGACCCAGCAGCAATAACATCAGCCTCAATCAGAATGTCTTGTAAGCCAGCATCTCCAAATCGCTTGCCAATACAGGACAGGAAAGCCATACATGTGTGAAACTCCCCCATTCTAATTGTAATCCCAGATCCTCAGCCATGCTGTGAGATATCTTCTTGACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35812 lncRNA upstream 109942 11610759 ~ 11615676 (+) True G26817
TU35811 lncRNA upstream 116301 11606323 ~ 11609317 (+) True G26816
TU35766 lncRNA upstream 259450 11465951 ~ 11466168 (+) True G26781
XR_005638742.1 lncRNA upstream 346118 11378435 ~ 11379500 (+) True LOC120555674
TU35724 lncRNA upstream 389811 11335435 ~ 11335807 (+) True G26748
TU35863 lncRNA downstream 37371 11765667 ~ 11765967 (+) True G26861
TU35880 lncRNA downstream 83387 11811683 ~ 11811942 (+) True G26878
TU35883 lncRNA downstream 175075 11903371 ~ 11912715 (+) False lto1
XR_005638841.1 lncRNA downstream 210778 11939074 ~ 11939803 (+) True LOC120556354
TU35893 lncRNA downstream 232395 11960691 ~ 11961733 (+) True G26890
XM_039794949.1 mRNA upstream 587220 10934633 ~ 11138398 (+) True minar1
XM_039794950.1 mRNA upstream 587220 10934633 ~ 11138398 (+) False minar1
XM_039794951.1 mRNA upstream 587929 10934633 ~ 11137689 (+) False minar1
XM_039794955.1 mRNA upstream 594146 11129921 ~ 11131472 (+) True LOC120555826
XM_039794952.1 mRNA upstream 604503 10934633 ~ 11121115 (+) False minar1
XM_039795938.1 mRNA downstream 174976 11903272 ~ 11912722 (+) True lto1
XM_039794273.1 mRNA downstream 827751 12556047 ~ 12562553 (+) True LOC120555527
XM_039795800.1 mRNA downstream 1337656 13065952 ~ 13071332 (+) True LOC120556313
XM_039796119.1 mRNA downstream 1361239 13089535 ~ 13091435 (+) True LOC120556474
XM_039795868.1 mRNA downstream 1416211 13144507 ~ 13176403 (+) True si:cabz01068815.1
TU35313 other upstream 1865618 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 2121182 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 2570275 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 2965317 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 5435842 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 303325 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 1381461 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 1506939 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 3713181 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 3746868 15475164 ~ 15486421 (+) False LOC120556001