RNA id: XR_005638846.1


Basic Information

Item Value
RNA id XR_005638846.1
length 436
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id LOC120556370
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7042183 ~ 7045161 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAAGTCTGTCACAAATCAAACTTCCGGTCAtcgaaataaaagaaaaacatacgCACATGCATTCAATCAAAATCCAAGGGAAGGGGACAGGGAAAGACAGGAGAAGAGAAGCAAGAGCAAGGAAAAGACCCAGTGTCAACCGTCCAGCATGCAGTGGAGACAGACACGGATAAAGACATGGACGAAACAATTGCTGCTGGCCAGTTTTCCGTTCTATACAGATCACCATGTCATGATGTCATCATGGCAGCCTGTGCTGATTGCTGTGGGCGTGGCTCAGCTGGCAGGTGGCTCCAGgTTGCAGCCTGCCTTGCTCGTTcgtttgcctgcctgcctgcctgcctacctgcctgcctgcttgctCCTCACACCTGCCCTTCTCTCTCTACGGATTGGACTCAATTGTTTGGACTCTGGAGGAGGCCTACCACATGG

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34746 lncRNA upstream 16422 7023866 ~ 7025761 (+) True G25902
TU34734 lncRNA upstream 36536 7002428 ~ 7005647 (+) False LOC120556365
TU34739 lncRNA upstream 48979 6992995 ~ 6993204 (+) True G25895
TU34737 lncRNA upstream 50252 6987512 ~ 6991931 (+) True G25893
TU34729 lncRNA upstream 62428 6974335 ~ 6979755 (+) True G25888
TU34791 lncRNA downstream 253338 7298499 ~ 7298701 (+) True G25942
TU34800 lncRNA downstream 285549 7330710 ~ 7337252 (+) True G25950
XR_005638763.1 lncRNA downstream 584961 7630122 ~ 7632825 (+) True LOC120555850
XR_005638762.1 lncRNA downstream 587670 7632831 ~ 7634497 (+) True LOC120555849
TU34815 lncRNA downstream 620635 7665796 ~ 7673941 (+) True G25959
XM_039795921.1 mRNA upstream 36505 6993956 ~ 7005678 (+) True LOC120556365
XM_039794210.1 mRNA upstream 546462 6493937 ~ 6495721 (+) True LOC120555501
XM_039796247.1 mRNA upstream 647379 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA upstream 647381 6382571 ~ 6394802 (+) False rwdd3
XM_039795724.1 mRNA upstream 731043 6295097 ~ 6311140 (+) True mtch2
XM_039795696.1 mRNA downstream 141568 7186729 ~ 7211577 (+) True bnc1
XM_039795970.1 mRNA downstream 187387 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795971.1 mRNA downstream 187387 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795969.1 mRNA downstream 187387 7232548 ~ 7290869 (+) True sh3gl3a
XM_039794993.1 mRNA downstream 272748 7317909 ~ 7330702 (+) True LOC120555848
TU34538 other upstream 752407 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 752407 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 754106 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 775475 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 989286 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 1708540 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 2023568 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 2521670 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 2802116 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 4986460 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile