RNA id: unassigned_transcript_138


Basic Information

Item Value
RNA id unassigned_transcript_138
length 83
RNA type tRNA
GC content 0.58
exon number 1
gene id trnal-uaa
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6051887 ~ 6051969 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCAGgatggccgagtggttaaggcgttGGACTTAAGACCCAATGGGTGAATACCCACGTGGGTTCGATCCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34494 lncRNA upstream 13918 6036859 ~ 6037969 (+) True G25710
TU34492 lncRNA upstream 16098 6035456 ~ 6035789 (+) True G25709
TU34435 lncRNA upstream 139434 5911229 ~ 5912453 (+) True G25675
TU34433 lncRNA upstream 158862 5892721 ~ 5893025 (+) True G25673
TU34421 lncRNA upstream 189020 5862659 ~ 5862867 (+) True G25663
TU34500 lncRNA downstream 226732 6278701 ~ 6280787 (+) True G25713
TU34614 lncRNA downstream 338630 6390599 ~ 6395706 (+) True rwdd3
TU34627 lncRNA downstream 376089 6428058 ~ 6428260 (+) True G25797
TU34657 lncRNA downstream 477549 6529518 ~ 6532184 (+) True G25824
TU34660 lncRNA downstream 538226 6590195 ~ 6590618 (+) True G25827
XM_039794097.1 mRNA upstream 19733 6026435 ~ 6032154 (+) True fadd
XM_039795083.1 mRNA upstream 30467 5918755 ~ 6021420 (+) False ano1a
XM_039794284.1 mRNA downstream 210441 6262410 ~ 6266708 (+) False LOC120555541
XM_039795724.1 mRNA downstream 243128 6295097 ~ 6311140 (+) True mtch2
XM_039796247.1 mRNA downstream 330601 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA downstream 330602 6382571 ~ 6394802 (+) False rwdd3
XM_039794210.1 mRNA downstream 441968 6493937 ~ 6495721 (+) True LOC120555501
TU34491 other upstream 16694 6034209 ~ 6035193 (+) True G25708
TU34243 other upstream 1476242 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 2266345 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 3968568 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 4209076 1839333 ~ 1842811 (+) True G25173
unassigned_transcript_139 other downstream 846 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 213005 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 235079 6287048 ~ 6288077 (+) True G25743
TU34538 other downstream 236221 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other downstream 237087 6289056 ~ 6289776 (+) False LOC120555541