RNA id: unassigned_transcript_139


Basic Information

Item Value
RNA id unassigned_transcript_139
length 83
RNA type tRNA
GC content 0.56
exon number 1
gene id trnal-uaa_1
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6052815 ~ 6052897 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCAGgatggccgagtggttaaggcgttGGGCTTAAGATCCAATGGGCGTATGTCCACGTGGGTTCGAGCCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34494 lncRNA upstream 14846 6036859 ~ 6037969 (+) True G25710
TU34492 lncRNA upstream 17026 6035456 ~ 6035789 (+) True G25709
TU34435 lncRNA upstream 140362 5911229 ~ 5912453 (+) True G25675
TU34433 lncRNA upstream 159790 5892721 ~ 5893025 (+) True G25673
TU34421 lncRNA upstream 189948 5862659 ~ 5862867 (+) True G25663
TU34500 lncRNA downstream 225804 6278701 ~ 6280787 (+) True G25713
TU34614 lncRNA downstream 337702 6390599 ~ 6395706 (+) True rwdd3
TU34627 lncRNA downstream 375161 6428058 ~ 6428260 (+) True G25797
TU34657 lncRNA downstream 476621 6529518 ~ 6532184 (+) True G25824
TU34660 lncRNA downstream 537298 6590195 ~ 6590618 (+) True G25827
XM_039794097.1 mRNA upstream 20661 6026435 ~ 6032154 (+) True fadd
XM_039795083.1 mRNA upstream 31395 5918755 ~ 6021420 (+) False ano1a
XM_039794284.1 mRNA downstream 209513 6262410 ~ 6266708 (+) False LOC120555541
XM_039795724.1 mRNA downstream 242200 6295097 ~ 6311140 (+) True mtch2
XM_039796247.1 mRNA downstream 329673 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA downstream 329674 6382571 ~ 6394802 (+) False rwdd3
XM_039794210.1 mRNA downstream 441040 6493937 ~ 6495721 (+) True LOC120555501
unassigned_transcript_138 other upstream 846 6051887 ~ 6051969 (+) True trnal-uaa
TU34491 other upstream 17622 6034209 ~ 6035193 (+) True G25708
TU34243 other upstream 1477170 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 2267273 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 3969496 2081958 ~ 2083319 (+) True G25204
TU34539 other downstream 212077 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 234151 6287048 ~ 6288077 (+) True G25743
TU34538 other downstream 235293 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other downstream 236159 6289056 ~ 6289776 (+) False LOC120555541
TU35083 other downstream 2700804 8753701 ~ 8760301 (+) True G26205