RNA id: TCONS_00075208


Basic Information

Item Value
RNA id TCONS_00075208
length 511
lncRNA type read_through
GC content 0.45
exon number 5
gene id XLOC_037428
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 48693432 ~ 48817119 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tggcagtgaggtgtttatgtttctctgtgtcaagtttcttcgctggtgttttgtttttcctgaacgcttccttaatgtacaagtggctcaaactcgctcattttgaggcaggaaccggcagacgtgcaacaacttcaaccatgagGCAGATCCACAGAAGACTTGTATTAGTTGAAGGACCCCATTTAAGATCATATGTGACCCCTGTGAAGCTCATGATGTGCACACGTGTCCTCAGACTCCTCTGAATGCTGTGTTTATTGTGAAGGACAGCCTGAGCACACCTTGACCTGTCAGGCTGAAATCAGGTAAAGTGTTATCAGTCTAATAAAGGGGAAGATATATAATGCTGGAGTTGCGGAAGAACTGACTGATAGCGGAGACCCACGCCAGCCAGAGCAGATCATCTCCACAGATGCAAACTAACAGAGAAGAATGATGAAGAATAAAAGTGGAAACTCTCCAGAGGACAGCGAAGTCATATACAACGCTGAagATGCTGACCTAAAGT

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073625 lncRNA upstream 19690 48682775 ~ 48687885 (+) True XLOC_037427
TCONS_00074937 lncRNA upstream 326003 48380855 ~ 48381572 (+) True XLOC_037425
TCONS_00075205 lncRNA upstream 578248 48123162 ~ 48129327 (+) False XLOC_037422
TCONS_00073618 lncRNA upstream 578248 48127608 ~ 48129327 (+) True XLOC_037422
TCONS_00073616 lncRNA upstream 579880 48123162 ~ 48127695 (+) False XLOC_037422
TCONS_00073632 lncRNA downstream 89739 48845578 ~ 48858403 (+) True XLOC_037430
TCONS_00075212 lncRNA downstream 114057 48869896 ~ 48877349 (+) True XLOC_037431
TCONS_00075213 lncRNA downstream 993497 49749336 ~ 49754453 (+) True XLOC_037434
TCONS_00075214 lncRNA downstream 1113613 49869452 ~ 49885824 (+) False XLOC_037436
TCONS_00073639 lncRNA downstream 1113853 49869692 ~ 49871467 (+) False XLOC_037436
TCONS_00073624 mRNA upstream 35321 48455909 ~ 48672254 (+) True XLOC_037426
TCONS_00073623 mRNA upstream 38602 48415043 ~ 48668973 (+) False XLOC_037426
TCONS_00073622 mRNA upstream 439929 48232572 ~ 48267646 (+) True XLOC_037424
TCONS_00073621 mRNA upstream 456748 48232571 ~ 48250827 (+) False XLOC_037424
TCONS_00073620 mRNA upstream 479595 48219140 ~ 48227980 (+) True XLOC_037423
TCONS_00073629 mRNA downstream 5616 48761455 ~ 48817119 (+) True XLOC_037428
TCONS_00073630 mRNA downstream 63441 48819280 ~ 48831418 (+) False XLOC_037429
TCONS_00073631 mRNA downstream 65792 48821631 ~ 48835494 (+) True XLOC_037429
TCONS_00073633 mRNA downstream 187632 48943471 ~ 49052004 (+) True XLOC_037432
TCONS_00073634 mRNA downstream 903275 49659114 ~ 49745424 (+) False XLOC_037433
TCONS_00073602 other upstream 2276442 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 2885990 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 3166982 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 3373470 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 3643306 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073638 other downstream 1029481 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 1333161 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 2044518 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 3326472 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 6492361 55248200 ~ 55248314 (+) True XLOC_037493

Expression Profile

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