RNA id: TCONS_00073628


Basic Information

Item Value
RNA id TCONS_00073628
length 3963
RNA type mRNA
GC content 0.50
exon number 27
gene id XLOC_037428
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 48693432 ~ 48817119 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATGAAGAATAAAAGTGGAAACTCTCCAGAGGACAGCGAAGTCATATACAACGCTGAagATGCTGACCTAAAGAATGGTGAagtcaaaaaaaaagagaaagcacCGACTGTCGGATTCTTTCAGCTGTTCCGCTTCTCCACATGGAGGGAAGTCTTGATGATGGTTGTGGGCAGCTTTTGCTCTCTGGTTCACGGTGCTGCCACCCCTCTCATGTTGCTGGTGTACGGCATGATGACCAACACATTCGTGGAGTATGAGGTGGAAATTCTGGAGCTCACAGACCCCAACAAAACCTGCATCAACAACACCATCAGCTGGATGAACGGTTCTGCAGTCCAACGGCCTGACAACACCACCATATACTGTGGTGTAGATATCGAGGCTGAAATGACCAATTTTGCACTTTACTACATTGGAATTGGAGTTGGAGTTTTAATCTTGAGTTTCTTTCAGATCACGTTTTGGGTTTCTGCAGCTGCCAGGCAGATCCAGCGCATCCGAAAAACCTACTTCAGAAAGATCATGTGCATGGAGATCGGCTGGTTTGACTGCAACTCTGTGGGGGAGCTGAACACGAGGATGTCTGATGACATCAACAAAATCAACAACGCTATAGCGGACCAGGTGTCCATCTTCATTGAGAGGATCTCCACGTTTATATTCGGCTTCATGGTGGGCTTCATCGGCGGCTGGAAGCTGACACTGGTGGTCATCGCAGTCAGTCCTCTATTAGGCCTCGCCGCAGGACTCATGGCTATGGCAGTGGCGAGGCTGACGGGTCGTGAGCTGAAGGCTTATGCTAAAGCCGGAGCGGTGGCTGATGAAGTGCTGTCCTCCATCAGAACAGTGGCCGCTTTCGGAGGAGAACACAAAGAGGCAGAGAGGTATGACAGGAATCTGGTGCAGGCGCAGGAGTGGGGCATAAAGAAGGGCATGATCATCGGGGTGTTTCAGGGCTATCTCTGGTGCATCATATTCCTGTGTTACGCTCTCGCCTTCTGGTTCGGCTCTAAACTGGTCATCGAGACCCAGGAGCTCACACCTGGAGGACTCGTTCAGGTGTTCTTTGGTGTTCTGATCGGGGCCATGAATCTGGGTCAGGCTTCTCCTTGTCTGGAGGCTTTTGCTTCAGGTCGAGCTGCAGCCAAGAGTATATTTGACACCATTGACAGAGAACCAGAAATCGACTGCTTCTCTGACGAAGGTCACACTTTAGATAAAGTGAAAGGTGACATTGAATTTCACAGCGTTAACTTCAACTATCCCTCCCGTCCTGAAGTAAAGATATTAGATGATTTGAACATTGTGGTCAAAGCTGGCGAGACGACAGCGTTTGTTGGACCCAGCGGATCAGGAAAAACCACAACAATACAACTCATCCAAAGGTTCTACGACCCAAGTGAAGGAATGGTTTCCCTGGATGGTCATGACATCAGAAGCCTGAACATCCAGTGGTTGCGTTCTCTTATTGGCGTCGTGGAGCAGGAGCCGGTTCTGTTCGCCACCACGATCGCTGAAAACATCCGATATGGCAGAGCTGGAGTCACAATGCAGGAGATCATAGAGGCTGCCAAACAGGCCAATGCCTATAACTTCATCATGAGTCTTCCTCAGACATTTGACACATTGGTTGGTGAAGGTGGAGGGCAAATGAGCGGAGGACAGAAACAGAGGATCGCCATTGCTCGAGCGCTGGTCAGGAATCCCAGAATCCTCCTGTTAGACATGGCCACATCAGCGCTGGATAATGAGAGTGAGGCTGTCGTACAGGAGGCCTTGGACAAGGCTCGACAGGGCCGAACAACTATCAGCATCGCACATCGTCTGTCCACAATCCGTAATGCAGACGTGATCGTGGGCTTTGAGCATGGCCGTGCTGTGGAGAGAGGCACACACAGCCAGTTACTGGATAAAAAGGGAGTTTACTTCACCTTAGTCACGCTCCAGAATCAAGGGAAGGACACAGACACTGATAAACCAGAGAACACTGCAGAGTCAAGAGTTACAGAGGAGGCTGAACTCGAGGAGCTCAGGAGATTCAGCAGTGGAAGTTATGAGAGCGTCTTAAGACGGCGATCTCTTTCTCAATTGTCAAACAGTCTTTCAGTCATTTCTGGAAAATTTGACTTCAATTCAGACCTTTTCGAAATGGAGGAATCGGATAACAACAAGAAAAGCAAAGGTAAAGCTAAAGAGGACATAAAACCGGCTCCTGTGGCTCGAATCCTGAAGTATAACCGTCCCGAATGGCCTTACATGCTGCTGGGGTCTATAGGTGCTGCTATAAATGGATCTCTCAACCCTATGTATGCTCTGTTGTTCAGTCAAATACTTGGGACGTTCTCTATTCCGGACCCGGATGACCAGAGGAGGCAGATAAATGggatttgtattttgtttgtggtCATAGGAGTCGTAAGCTTCTTTTCACAGTTCTTACAGGGCTACTCGTTCGCTAAATCAGGAGAGCTGTTGACTCGTCGGCTGAGGAAATTTGGATTTCAGGCGATGCTAAAGCAGGAGATCGGCTGGTTTGATGATCCCATGAACAGTCCTGGTGCTTTGACGACCAGATTGGCCACCAATGCCTCCATGGTTCAGGGGGCCACAGGTTCACAGATTGGCATGATCGTCAACTCTCTGACCAACATCGGCGCTTCCTTCATTATTGCCTATTACTTCAGCTGGAAGCTCAGTCTGGTGGTCACCTGCTTCCTGCCTCTCATCGGCCTCTCTGGAGTCTTTCAGTCCAAAATGTTGACAGGACTCGCTAATGAGGACAAAACCGCACTGGAGGCTGCAGGACAGGTGTCCAGTGAAGCTATGAGCAACATCAGGACCATCGCCGGTTTAGCCAAAGAAAAGCACTTTGTGGCTCAATTTGAAAAGCAGCTTCAGGCTCCGTATAAAGCAGCCAAGAAAAAAGCTTACGTTTATGGGATTTGTTTCGCATTCGCTCGCTGTGTCATTTTCATGGCCTACGCTGCATCCTTTAGATACGGAGGCTATTTGGTCAGTCATGAGGGGCTTCAATACATGATGGTGTTCAGAGTGATTTCTGCTCTGGTGACCAGCGCCACTGCACTTGGCAGAGCTTCATCTTTCACACCAGACTATGCGAAAGCGAAGATCTCCGCTGCACAGCTTTTCCAGCTGTTGGACAGGGTTCCCAAAATTAATGTCAGCAAAACAGAAGGACAAAGCTGGAATGACTTTAAGGGCAAAGTGGAATTCAAAGGGTGCAGGTTCACGTATCCCAGCCGGCCAGACGTACAGGTTCTGAGGGGTCTGGTGGTGTCGGTTCATCCAGGACAGACTCTGGCTTTTGTGGGTAGCAGTGGCTGTGGAAAGAGCACCAGTGTTCAGCTACTGGAACGATTCTACGACCCCGATGAGGGACAAGTGCTGATTGATGGACGCCCGTCCGACAGCATCAGCGTTCCCTTCCTGAGGTCTCAGATTGGTATTGTATCCCAGGAGCCCGTGCTGTTCGACTGCAGTATCGCAGAGAATATCCAGTATGGAGATAACTCTCGAACCGTGAGCATGGAGGAGATTATAGACGCTGCTAAGAAGGCTTATCTGCATGACTTTGTGATGACGCTTCCTGATAAATACGAGACTCAGGTTGGTGCTCAGGGCTCTCAGCTGTCTCGTGGACAGAAACAGCGAATAGCGATTGCCCGAGCCATCGTCAGAAACCCCAAAATCCTGCTGCTGGATGAGGCCACGTCTGCACTCGATACTGAAAGCGAAAAGACGGTTCAGGCAGCGCTGGACGAGGCCCGTCAGGGACGCACGTGTATCGTCATCGCTCACAGACTCTCCACCATCCAGAGTGCCGACATCATCGCAGTGATGTCACAGGGCGAGGTCATCGAGAAAGGCACACACGACGAGCTCATGGCCAAGAAAGCCGCATATTATAAACTGGTTACCACAGGGGCTCCTATTAGTTAA

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-050517-13 Predicted to enable ABC-type bile acid transporter activity and canalicular bile acid transmembrane transporter activity. Predicted to be involved in canalicular bile acid transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestine. Human ortholog(s) of this gene implicated in benign recurrent intrahepatic cholestasis 2; intrahepatic cholestasis; liver cirrhosis; and progressive familial intrahepatic cholestasis 2. Orthologous to human ABCB11 (ATP binding cassette subfamily B member 11).

Ensembl:

ensembl_id ENSDART00000047401

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075211 lncRNA upstream 488 48740540 ~ 48755150 (+) False XLOC_037428
TCONS_00075207 lncRNA upstream 41643 48707575 ~ 48713995 (+) False XLOC_037428
TCONS_00073626 lncRNA upstream 41644 48713222 ~ 48713994 (+) False XLOC_037428
TCONS_00073625 lncRNA upstream 67753 48682775 ~ 48687885 (+) True XLOC_037427
TCONS_00074937 lncRNA upstream 374066 48380855 ~ 48381572 (+) True XLOC_037425
TCONS_00073632 lncRNA downstream 29547 48845578 ~ 48858403 (+) True XLOC_037430
TCONS_00075212 lncRNA downstream 53865 48869896 ~ 48877349 (+) True XLOC_037431
TCONS_00075213 lncRNA downstream 933305 49749336 ~ 49754453 (+) True XLOC_037434
TCONS_00075214 lncRNA downstream 1053421 49869452 ~ 49885824 (+) False XLOC_037436
TCONS_00073639 lncRNA downstream 1053661 49869692 ~ 49871467 (+) False XLOC_037436
TCONS_00073624 mRNA upstream 83384 48455909 ~ 48672254 (+) True XLOC_037426
TCONS_00073623 mRNA upstream 86665 48415043 ~ 48668973 (+) False XLOC_037426
TCONS_00073622 mRNA upstream 487992 48232572 ~ 48267646 (+) True XLOC_037424
TCONS_00073621 mRNA upstream 504811 48232571 ~ 48250827 (+) False XLOC_037424
TCONS_00073619 mRNA upstream 523863 48219111 ~ 48231775 (+) False XLOC_037423
TCONS_00073630 mRNA downstream 3249 48819280 ~ 48831418 (+) False XLOC_037429
TCONS_00073631 mRNA downstream 5600 48821631 ~ 48835494 (+) True XLOC_037429
TCONS_00073633 mRNA downstream 127440 48943471 ~ 49052004 (+) True XLOC_037432
TCONS_00073634 mRNA downstream 843083 49659114 ~ 49745424 (+) False XLOC_037433
TCONS_00073636 mRNA downstream 896837 49712868 ~ 49745424 (+) False XLOC_037433
TCONS_00073602 other upstream 2324505 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 2934053 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 3215045 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 3421533 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 3691369 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073638 other downstream 969289 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 1272969 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 1984326 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 3266280 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 6432169 55248200 ~ 55248314 (+) True XLOC_037493

Expression Profile

//