RNA id: TCONS_00073631


Basic Information

Item Value
RNA id TCONS_00073631
length 5081
RNA type mRNA
GC content 0.38
exon number 6
gene id XLOC_037429
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 48819280 ~ 48835494 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCATCATGGCATCTGTCAGAGAATATAATGTAGTGGAGCAGTTCAACAGCAAACTGGAGGAGATCAGGGCCAAAATGCTGGATCAGGCCATGGGAGAAGTGCTCAATGACACGGAGCTCTGTCAGGAACACAGGCAGTACAAGAAATCTGTCCTGGATACATGCTTTAAGAAATGCAAAGAGGATGAAACCATGTTTGACatgatacaaaaaaacaaacaagAATTGAAGGAGAACTCGTCTTTACTGAGAGAGAAGTCTGCTGAACATGTTGAGATTGTGTCGGGGATTGAAGACAAGGAGCATCACAAAGCGCTCCTGTTTCAGAGAATTGAGAAGCTCAAGAAGGATCAGGCCAAAAACAGGGAATTGATTCAGTCACAAAACAAAGCCAACAAGGACAGGCTGAAGAAGCTGAACAAATGTAAAGATGTCTTTCAGAAGCATCTCAGCCTTGAGATCAGAAAAATTCAAGGTGAAAAGCTGCAGTTTGTCTTCAGGAACATCAATGCTAAAGATCCAGACATGGTTCATGCGTTTCTCCTCCAGTTGGATGCAGAGGGCATTTACCACAttatCTCCTGTGACCCTCCTCTGGAGAAAATGACACAGCTAGAGAGCAGACTGCAGGAAACCAACAACTTCTCTGCCTTCCTGGCTAACGTCCGGAGAGAGTTTGTGGCGCTTCATACAGGTGCAAAGATGACCTAAATTTCAGAAACGGTCAGAGACCCAGACACCATATTTATAGATATCATCAGCAAATATATCctgctttttgttttttgaacCACCAGTAATCACTTAGTGTGAAGTATTAAATTGTTTCTGCTTTGTACATTGCTTTATTGattcattatttttaacaataaacaaCATTTATACAAGTCGTAAAACTTAAAGTGCTTCGTTTTATACTACAGTGacaatataatgtaaacaattTGAATGCTGTGTGAtcaaaatcattaataaaattaacaacACATTTTTTGTGAAACGTTATATAGCAGCCGTGTTTCATTCAGAGGCTACCCATGATCAcgaaaaacccaaaacatcaatTTTTTCACAGTTTTGATGTGTAGTAAGGACATTTACGCAATCATGTCAATTAATTAATTGGTTCTATATTGCATTTGCATACTTTTAATACTGCTTACAAGCCACAGTAATACATTGTTCATTAGTGAGTGAATTattcacaataatcaatatatcgacaaCTTGTGCTATATTTGGAGATAacatcaaattcattcattcattcattcattttcttgtcggcttagtccctttattaatccggggtcgccacagcggaatgaaccgccaacttatccagcaagtttttacgcagcggatgcccttccagccgcaacccatctctgggaaacatccacacacacattcacacactatggacaatttagcctacccaattcacctgtaccgcatgtctttggactgtgggggaaaccggagcacccggaggaaacccacgcgaagacagggagaacatgcaaactccacacagaagcgccaactgagccgaggttcgacccagcgaccttcttgctgtgaggcgacagcactacctactccgccactgcctcgccctaacatcaaattatagaatttaaataaccttaaaggtgctgtatgtaagtttttgacttactttgagtttttttaaagcataaaaataccatggtATGTTTGCATTATAGAAACaagctaagtgaacattcttgtttatctgaaaaacaatgctgaagtcagatattgtGCTTTGATATTGTGTGTTTACGTGCCTGAATggttgtctttgttttggtcatttaatccGCCctctgccactttagccaattatatttcagcaccctgggttgccttcaTGGAAAACAgcctatttattcattcagtctgGGAGGCTctcaaaggctgcatttacactgcagatcttgatggtcaattccgattttgtgactgtatccgacttttttttgatgacctgcttacatcatcttttaaaagtgactcgtatccgatcgtctgcatttagggtgctttcacacctacacttttgtttcggaacgtatctcgtttgcccagttagcgcggttcgattggcatatgtgaacagggcaatcgcgctctgttccgcgccaaagtaatcgctccgagatcgcttgaatgaggtggtctcggctcgattgaaacgaaccctggagcggttcgattgcagtgagaaagcgatccgatccgagcgcggttatatcacagtgttttatggatatgtaataggcttacggctatatgaagagagaattatgagtagggcgggaagtttcgcgagtctccggatgcccgcaaacgagtgatgatctcccggtaatctcgcgtctctctcccagtcctcaaataggcatcatcgcgcacccttctcacccctccccaccgtgtctctccccagacacgtcacgcgcgcaccctgacaatcaccaccaaaccaccacctctcctgacagctgagcgggacgctgcaaaataaaccctgacactctgaccaatgtaaggagagtttactcacacgtgacttgttttagctcttttggtccgattagaaactttgcagtgtgaaagcgaaccgctccaagagcaaagagcaacaatgtaacaattctaatctctgtttcggaacaactgaatcgattcacaggtgtgaaagcacccttacacagcacatggcaaaggcgcaatgaccaggaaaaaaacgagcgggcgctgactaacagctgataattaaagagtgctcttttcactattcctgtatgtaatatGTTTGCAGCTTttaacaagctgttttactatagtttgacagaaaggttctcatttgtccatctacttttgatatataggcttttttcaactctttaggcatcttaatgtaatgtccatggcgtgattaaTGCACGAGATGTACAcactagttttatattggttacgtggcgaacattgcgctctctcgctcACGTTAACATGCTTAagtacctgtgctatatgacaaaaaaaaaactgttttagtcCTCGTgtttgagatttaaggtttgggactttgctgaagtctgttcggaaaagaaagtgtcagacttgacgtcattcgcaaCGGTTTTTAATGCCATAttcgatctgtgccacatgggagaaaaaaaaatagaattgactcacttgaacagtgcagtgtataTGCAGCCAAAGTGTGCCTCCCTGACCGAAATGCGACTTTTGGTGGACAGTaacagactccaaaatgagacgcagattcagagtttcacatgaggtggtcattaattagcaaataatctaaatatttattactaatgtaagcattaggtgagcaggttacattgtaacccagtgtcctaacaacacgctttgTGACTATATTTGCAGTGATACGCAATTTggcatgacagaaatttaaatacagccattcagaggCACAGAacagtgcactcactgcactccaacaaaatgatAAGCTTTATAAACTActtaatacacattaaacctctttaaaattattaacattattaaatgtagttgctgaatcactgatatgtgttgagtCACAGTTCTCAATTTCTAATGGTTTACTTTATTGTCAATTTCTGAGGTGAACTGTTCTGTGATCTGTTGCTGCTTTCAGTACtatggcaataaatgtaatgtaaaatgccattcaaactcacattattagcattaaacactgaataaagcacatgaggtgtatctGAGATGATCACTGTCAGTCATGTTGTTCACCAGTGGTAAATAGAAGCTGcttctaaaatattaatttcaggtgttggttagaacaaaaactccttttaatatgtgaatattccttctattgtgtgTCATTGATTTTATTTAGATCACGGTTTATATTAGCCTTTAGACTCGACAGTCAGGCACACTGTtgttgatgtcgtcaatctggcaacctgcgcttgcatgtgttttgaaccaggcctgcaatacctagttcaacaactgggtgtcaaacttacatactgcacctttaagaataagtatttttaagtgtttaaggCTATTTGCATTATGCTGTTATAATCATATAATCAGTTGCATAAAATAGTCTCAAAATGACAACAGTATCGCTTTTCGCAACAATTTCTGTGAAAATATATCGCACAACAAAAGTCCCTTATCGTGACATGCCTAGTGAGTGCTCTTTGGATTTATTAAGTGATTCTactgaatgattattttaatcccattaattatgttaaaaaactgttttaattttcCTTGTATTAAAATTTCACcccaaaatacaatttttattttagatttctcAACCCCAGGGTATTCAAGATGTAGATGGCTTTTTCGTCAATAGAGCATAAAAGATTTATAGCTGTGATACTTCATAAACTACTCCATGAAATGCAAATCCAAAAAGCATGCAGGCAAAACTACATTCAAATCTGTGTATCATTGAGATGCATTGAGGTCTTGGGAAAATAAGTCATTATTATATCACAGAAGCCGAACATTATttgaagttgaagtcagaattattagccccctgtatatttttcctccaatttctgtttaacagagtgaaGATTTTCCTCAACACAttcttaaacataatagttttaagaactaatttctaataactgatttcttttatctttgccatgaagacagtacataatattttactagatatttttcaagacacttctatacagcttagtgacatttaaaggcttgattaggttaattaggcaagttagggtaatcatGCAAGTCATtctataacaatagtttgttctgtagaaaaaaatagcttaagaggggtaataatattgaccttaaatgttttttttttttttttttttttttttagaaattagaaatatttttttattagaatttattctagctgaaataaaaccaataagaagaaaaaaatattatagagattactgtaaaaaaaatccttgctctgttaaatatttaaGAGAAATattaagagagaaaaa

Function

GO:

id name namespace
GO:0007059 chromosome segregation biological_process
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0031262 Ndc80 complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060810-13 Predicted to be involved in chromosome segregation. Predicted to act upstream of or within cell division. Predicted to be located in nucleus. Predicted to be part of Ndc80 complex. Orthologous to human SPC25 (SPC25 component of NDC80 kinetochore complex).

Ensembl:

ensembl_id ENSDART00000190236

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075208 lncRNA upstream 65792 48707575 ~ 48755839 (+) False XLOC_037428
TCONS_00073632 lncRNA downstream 10084 48845578 ~ 48858403 (+) True XLOC_037430
TCONS_00075212 lncRNA downstream 34402 48869896 ~ 48877349 (+) True XLOC_037431
TCONS_00075213 lncRNA downstream 913842 49749336 ~ 49754453 (+) True XLOC_037434
TCONS_00075214 lncRNA downstream 1033958 49869452 ~ 49885824 (+) False XLOC_037436
TCONS_00073639 lncRNA downstream 1034198 49869692 ~ 49871467 (+) False XLOC_037436
TCONS_00073629 mRNA upstream 4512 48761455 ~ 48817119 (+) True XLOC_037428
TCONS_00073628 mRNA upstream 5600 48755638 ~ 48816031 (+) False XLOC_037428
TCONS_00073624 mRNA upstream 149377 48455909 ~ 48672254 (+) True XLOC_037426
TCONS_00073623 mRNA upstream 152658 48415043 ~ 48668973 (+) False XLOC_037426
TCONS_00073622 mRNA upstream 553985 48232572 ~ 48267646 (+) True XLOC_037424
TCONS_00073633 mRNA downstream 107977 48943471 ~ 49052004 (+) True XLOC_037432
TCONS_00073634 mRNA downstream 823620 49659114 ~ 49745424 (+) False XLOC_037433
TCONS_00073636 mRNA downstream 877374 49712868 ~ 49745424 (+) False XLOC_037433
TCONS_00073635 mRNA downstream 877374 49712868 ~ 49745424 (+) False XLOC_037433
TCONS_00073637 mRNA downstream 892117 49727611 ~ 49745424 (+) True XLOC_037433
TCONS_00073602 other upstream 2390498 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 3000046 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 3281038 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 3487526 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 3757362 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073638 other downstream 949826 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 1253506 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 1964863 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 3246817 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 6412706 55248200 ~ 55248314 (+) True XLOC_037493

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000107_00014144_00017691.mRNA True 868 mRNA 0.43 6 CI01000107 14144 ~ 17842 (+)