RNA id: TCONS_00073632


Basic Information

Item Value
RNA id TCONS_00073632
length 546
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_037430
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 48845578 ~ 48858403 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTCAGAGCAACACTGCAATGTTTGGATGCTGAATGAATCAAGATTTGCCGGATTTCCTGAATGACATCCTGATTGAGAGCGTTTCCCAGAATGCTGTAAGAATAATGCAGATATAAATGCACAGCAGCCACATGAATAATGAAGCGAGGAGAATGATGCAGTGTAGTGTGGTACCGGTGGGCATCTGCCGAGGCGAACATCTCATCTGATATGAAGGACCAGGCATGATACGTGGAGCTTTGAAGAGGGAAAAACTGTCAATGAGTTTGCAGAGCAACTGCATCAAATATTAACCTGCACTGCTGATGTGGTGAAAACAACTCGACACTGAAGAACAATACTCGTCTCACTCTTTGTCCAATTCTATGGGTAAAAAGGACCTGACATGCAATACTTGTTGTTTTCGCTTGTTTATACTTCAATCAAAGCGTCATTTTTAAAGGTTTGAACTTTTAGGTTTAAGATTTTAATATATTGTTGATTTCGAAAGTAAATTGCACAaagaattttaagatatttttatgaataaaaataacatttaaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075206 lncRNA upstream 89739 48693432 ~ 48755839 (+) False XLOC_037428
TCONS_00075208 lncRNA upstream 89739 48707575 ~ 48755839 (+) False XLOC_037428
TCONS_00075210 lncRNA upstream 89739 48740524 ~ 48755839 (+) False XLOC_037428
TCONS_00075209 lncRNA upstream 89739 48740524 ~ 48755839 (+) False XLOC_037428
TCONS_00073627 lncRNA upstream 89881 48740524 ~ 48755697 (+) False XLOC_037428
TCONS_00075212 lncRNA downstream 11493 48869896 ~ 48877349 (+) True XLOC_037431
TCONS_00075213 lncRNA downstream 890933 49749336 ~ 49754453 (+) True XLOC_037434
TCONS_00075214 lncRNA downstream 1011049 49869452 ~ 49885824 (+) False XLOC_037436
TCONS_00073639 lncRNA downstream 1011289 49869692 ~ 49871467 (+) False XLOC_037436
TCONS_00073641 lncRNA downstream 1011990 49870393 ~ 49871467 (+) False XLOC_037436
TCONS_00073631 mRNA upstream 10084 48821631 ~ 48835494 (+) True XLOC_037429
TCONS_00073630 mRNA upstream 14160 48819280 ~ 48831418 (+) False XLOC_037429
TCONS_00073629 mRNA upstream 28459 48761455 ~ 48817119 (+) True XLOC_037428
TCONS_00073628 mRNA upstream 29547 48755638 ~ 48816031 (+) False XLOC_037428
TCONS_00073624 mRNA upstream 173324 48455909 ~ 48672254 (+) True XLOC_037426
TCONS_00073633 mRNA downstream 85068 48943471 ~ 49052004 (+) True XLOC_037432
TCONS_00073634 mRNA downstream 800711 49659114 ~ 49745424 (+) False XLOC_037433
TCONS_00073636 mRNA downstream 854465 49712868 ~ 49745424 (+) False XLOC_037433
TCONS_00073635 mRNA downstream 854465 49712868 ~ 49745424 (+) False XLOC_037433
TCONS_00073637 mRNA downstream 869208 49727611 ~ 49745424 (+) True XLOC_037433
TCONS_00073602 other upstream 2414445 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 3023993 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 3304985 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 3511473 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 3781309 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073638 other downstream 926917 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 1230597 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 1941954 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 3223908 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 6389797 55248200 ~ 55248314 (+) True XLOC_037493

Expression Profile

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