RNA id: TCONS_00073635


Basic Information

Item Value
RNA id TCONS_00073635
length 2702
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_037433
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 49659114 ~ 49745424 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaagctgcctgcatgttaaaacaaaagtaattttattcttaaaaactgaccggcccttctggcatttgccagaattgccagatggtcAATCCGGCCCTGCCAATAAGAGAACCATAAAGTACCGAACCGATAAGCggtatcgataaaagtagtaatatcGTTACAACCCTAACGATACCCATACctagctgtttgtgtgtgtgtgtgtttgtgtggttctccatatgtttttgaaaaatattcaataatgtgATCCATGAAAAAGTAACTAGTCCGATTACGAGATATAGAGTAGTTTACTCCGATTTCAAGcacttgatttttaaagaaagatTACATATAAACTGTACCGAGTgcactttctgtgtgtgtttgagtgtttttgGCTCATTGCCGTGTGCCCTGGTTCACCTCTACAGACGATGTTTCTGCGCCGGTGATGGACTGTCTGTTTTCCTCTCTGCCTCCCTCTGATGATGGTAAAAATATCTGCAGACAGCAGGAgcactgctctctctctctctctctctctctctctctctttttctcttggtctctctctctctctctccagcatGTGATCTGTCAGGCAGGCGTCGCTGTGCCTCCGCGGCTGCAGCTAATGAGTCTTTGTGTGGCTGGTGTGAGCGAGTGTGCGCTGTGTTTTCTGCTAGCGGCGCTGGATTCGGGAGTGTGTGTTTCTCCGGTCTGATGGAGGGCCTTCATTCAGCTCGTCTGTGGTGCTGCTGGTGGACGCAGGTTGGTGGATTTGGAGGTGAAAGCAGGACTCGTGGGCTGTGTTTGTGTTCTGGCCTGATGGGGAATCTGAGtcatGAGTGGGATTCTGAAGAGGAAGTTTGAGGAGGTGGAGGGAGCGTCTCCGTGCTCATCTCTGCGGGAGTCTGAGGAGGAGGAGATCTCCAGCACTGAGAGCGGAGACAGCAGCGACAGCGTCAACCCGTCGGCTTCCCACTTCACACACTCCACAGCGACGGCAGCGTCAGCGCAGACACACACGCTACAGCGCACAGCCTCCTCCATCCTGAAGCGGGAGAAGCGCATGAGGACGCGGCGGGTGCACTTCGAGAAGGTGACGGTGTATTACTTCAGCCGGCGGCAGGGCTTCACCAGCGTGCCCAGTCAGGGTGGCAGCACTCTGGGCATGTCCAACAGACACAGCTGCATCCGGCAGTACACACTGGGAGAGTTCGCCATGGAGCAGGAGAGGATCCACAGAGACATGCTGAGAGACCACCTGAAGGAGGAGAAGCTCAACTCCATACGCCTGCGGTTGACGAAGAACGGCTCAGTGGAGTCTGAGGAGGCGAATGCTCTGACGCTGGACGACGTCTCTGATGATGACCTTGACATTGATAACACAGAGGTGGACGAGTACTTCTTCCTCCAGCCACTGACCACTAAGAAGCGACGTGCTCTGCTGCGCTCGTCCGGAGTCAAGAAGATCGATGTGGAGGAGAAACACGAGCTGCGGGCCATCAGGGTGTCCAGAGAAGACTGTGGCTGTGACTGTAGACTCTTCTGTGACCCAGAAACCTGCACATGCAGCCTAGCCGGCATCAAGTGTCAGGTGGACCGAATGTCTTTCCCTTGCGGCTGCACGAAAGAGGGCTGCAGCAACGCAGCCGGCAGGATCGAATTTAATCCCATCCGAGTGCGGACTCACTTCCTGCACACCATCATGAAGCTGGAGCTGGAGAAGAGCCGCGAACAGCAGAACTCCGGCGCTGTGGCTGGAAACGGATTTCACAGCGACCCCAATGGACACTGCAGCCCGCTGGCGACGGGACAGCACGCACTGGAGTATGCAATCCCAGATACAGTCCCGCAGACCACCATCATGCACCTGCAGTCTGGAGACGACATGGACGAGGTCTTGGAGGacgaagaggaagaggaggaggatgaagatgaagaagatgaagaggatgatgaagatgatgaagatgatgatgatgatgaagatgaagatgaaaaaGACGATAGCAGCAGTTTGTGCAGCTTATCCGATTCCAGCACGCAGAGTTTGGCCAATAGCGACTCTGAGGAggaagatgatgatgaggatgaagaTAAGGTGAAGGAGTTTGAAACAGGATTGGCCAATAGCGAAGTGGCTCCGCCCCCTTCTGTGATGCGTTACTCTGAGAATACGATCACGTCAGACAACCAAACAAACGGCAACTCGTACTTCATCAACTCCACCGCAGAGTACTACTCAATGGAGAACGTTACCCCGCCCGTACTTTTGGCCTCCAACCAATCCAGTGAGCCCTACATAGGCGACACTGCGTCTTATCAAGACAGGGTTAACGACTCAAATAGGGTCATGTCTCAGGGTCCCTTTAATGTGACCGCTGACCAATACGCGGACTATTCCCAGCAGCCAGAGCAGCCATATGCTAATCACCACTTGGCCGTGATTGGCTGCTGCACTCCAGAGCCAGAGAAAAGCATCCAATCTAAAGGGAGCTTCCTCAGCCAATCAGGAGAGCTGAACCAGATGGAGTTTCAGAACTATCTGAACAACAACACGCAGGATACAGGCTACAATGCCAATGGGAACTGTTATGTAGCTGAGCAGCCAAAGGAGATGCCTCACAATCTGCCTGACGTTTCGCTAGCGGACACCGCGAAAGAAACTACTTTACTGGACGCTTTCCCCGAGCCCACTCCGGTTTAG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-120313-2 Orthologous to human CSRNP3 (cysteine and serine rich nuclear protein 3).

Ensembl:

ensembl_id ENSDART00000183310

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075212 lncRNA upstream 835519 48869896 ~ 48877349 (+) True XLOC_037431
TCONS_00073632 lncRNA upstream 854465 48845578 ~ 48858403 (+) True XLOC_037430
TCONS_00075210 lncRNA upstream 957029 48740524 ~ 48755839 (+) False XLOC_037428
TCONS_00075213 lncRNA downstream 3912 49749336 ~ 49754453 (+) True XLOC_037434
TCONS_00075214 lncRNA downstream 124028 49869452 ~ 49885824 (+) False XLOC_037436
TCONS_00073639 lncRNA downstream 124268 49869692 ~ 49871467 (+) False XLOC_037436
TCONS_00073641 lncRNA downstream 124969 49870393 ~ 49871467 (+) False XLOC_037436
TCONS_00073640 lncRNA downstream 124969 49870393 ~ 49871467 (+) True XLOC_037436
TCONS_00073633 mRNA upstream 660864 48943471 ~ 49052004 (+) True XLOC_037432
TCONS_00073631 mRNA upstream 877374 48821631 ~ 48835494 (+) True XLOC_037429
TCONS_00073630 mRNA upstream 881450 48819280 ~ 48831418 (+) False XLOC_037429
TCONS_00073629 mRNA upstream 895749 48761455 ~ 48817119 (+) True XLOC_037428
TCONS_00073628 mRNA upstream 896837 48755638 ~ 48816031 (+) False XLOC_037428
TCONS_00073642 mRNA downstream 255080 50000504 ~ 50007673 (+) False XLOC_037438
TCONS_00073643 mRNA downstream 255112 50000536 ~ 50020516 (+) False XLOC_037438
TCONS_00073644 mRNA downstream 255176 50000600 ~ 50007675 (+) False XLOC_037438
TCONS_00073645 mRNA downstream 256322 50001746 ~ 50032969 (+) False XLOC_037438
TCONS_00073646 mRNA downstream 262132 50007556 ~ 50032945 (+) True XLOC_037438
TCONS_00073602 other upstream 3281735 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 3891283 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 4172275 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 4378763 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 4648599 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073638 other downstream 39896 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 343576 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 1054933 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 2336887 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 5502776 55248200 ~ 55248314 (+) True XLOC_037493

Expression Profile

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