RNA id: TCONS_00008685


Basic Information

Item Value
RNA id TCONS_00008685
length 2754
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id XLOC_003689
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42042559 ~ 42069664 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATAGAGttgaaaaaagtttatttttctcTTCATATAGAAAATATTTCTCATACACATTACTTTCGCAGTGGAAAGCATCCGTTGTGAAACAATACGCCTCATCAAACTGAAGCAGAAACACACCAGAGAGGACATCATCTgaataaatgcaaacatttgcACATTATGAGCTGGGCAtagaccaacacaatctcacggcaattcgtaactttttcattcagtggctaattcgtatgaattcgtacgatctaattcgtacaattcagtacgatttgcttatcccccaatgacggttggggttaggggtggggtcaggtgccacgcctcctttttaaaatcgtaccatttcgtacgactgaactcgtacgaattcgtatgaattagccactaaactggcaaaacgtaaaatacttacgttttctcgtgagatcaggctgcatagACAGCAGATCTGCAATAATGCAAATACAGAGTACATATACAGCAGTATATAGAGGATACATGTATAGATCTCTATACTTAATGAACTAAAGAGTTTAACATAAACCCATTGAGAATGATAGAAATGACATTTCATTTGTTCAAATCCTCATAGAGGAGATAGACACTGATACAGGGATCGTTTTCAGACACAAGTATAATCAAAAATGATCAATTAATGCttttcacaataaaaacaaatgcagtttCAACATGAAGCAGAACTAATACTGATTTGACTTCAGTCACATTAAGCATCAGCACAATAGTGAACATTATACCCAGAGGATATTTCCTTAAACTACAAATAGTATTTTCTCAAAATGAGAATTACAAGTCTTGAAGATCAGATGTGTCCGAACTGGAGCTCCTGAAAGTCTTCCTCAGCTTGTAGAATGAAGCCGTATAAACACCCTTTAAACTAAAGAGATTTATCTGATGATGCATCAAGTGTTtaacatttgctttaataaaagcAACTTCTGATCAGAAATATCAATCAAAACAACAAGATTTAGTAAATAAATCACAGGTCTCCTCACAGCAATCTTCACTGAAGatcaacatttacacacactttcCCACAACAGGAAGAACACACTTTGTCCAGATACAAGTTGCTGTATAAATAAGCAGCAGCAGATTCAGGATCAGCACTTAAGAGAGTGATGCACTCATGTTCGTCTCTCGGTCCTGAAACAGGACAATAAGAACAGTCACATCTCATGAAGATGCAGCTGAAGTAAGTCAGAGTTGTCTAATATAGACATTATTATCAGGAGCTCTGCTCATTGAGTCTCTTCACAGAAGTCTTGATGATCAGAGCAGATGATTCTCCTGAACTCCTGAAAGTCTTCATCTCCTCATACACTGAGAGTCTGAGCGTCTGCTGTAGACGTGGAGCTGCTGGAAGCCTCTTCAACTCCAGCTCTTGTTGACTTTGCTGAAGCTCTCGTGCTCAGATGATGAAGTAAGTCTGCAGCTTCTAGTTCAGCTCCAGCAGTCTTCATCTCCGCCTCTTCATCTCCTCTCTGGACAGAAAGAGCTCAATCTCAGCATGTCAAGTGGAGCGTCTCTGCTTTCTTTCTCCAGCTTGGAGGAACTCTGGAGCCAGAAGAGCTGCTGTGGAGAGCTGATCATCAGCTCTCCAGAGTTCCTCCAAGCTGGAGAAAGAAAGCAGAGACGCTCCACTTGACATGCTGAGATTGAGCTCTTTCTGTCCAGAGAGGAGATGAAGAGGCGGAGATGAAGACTGCTGGAGCTGAACTAGAAGCTGCAGACTTACTTCATCATCTGAGCACGAGAGCTTCAGCAAAGTCAACAAGAGCTGGAGTTGAAGAGGCTTCCAGCAGCTCCACGTCTACAGCAGACGCTCAGACTCTCGCTGTATGAGGAGATGAAGACTTTCAGGAGTTCAGGAGAATCATCTGCTCTGATCATCAAGACTTCTGTGAAGAGACTCAATGAGCAGAGATCCTGATATAATAATGTCTATATTAGACAACTCTGACTTACTTCAGCTGCATCTTCATGAGATGTGACTGTTCTTATTGTCCTGTTTCAGGACCGAGAGACGAACATGAGTGCATCACTCTCTTAAGTGCTGATCCTGAATCTGCTGCTGCTTATTTAGCGACTTGTATCTGGACAAAGTGTGTTCTTCCTGTTGTGGgaaagtgtgtgtaaatgttgatCTTCAGTGAAGATTGCTGTGAGGAGACCTGTGATTTATTTACTAAATCTTGTTGTTTTGATTGATATTTCTGATCAGaagttgcttttattaaagtaaatgttACACACTTGATGCATCATCAGATAAATCTCTTTATTTTAAAGGGTGTTTATACGGCTTCATTCTACAAGCTGATAGTGTCTATTGTCGTGTGAAATGTTTTCATTTCTCGATATTGATGTGCTGTTTATATAAAGTGGCTCAGATTGAGCTTGTATTTGGCTTATTGTACTATGATGATCTTCTATTTGAGATGATCTGCATTCAGAGGCTTTATGATTCAGATTGAATCTTTTCTCTTTGGTCTATATTAGACCACATACATGTACCCTGCTTTAAGGGTTTGTTGATTCTCAACATGTGTTGAATATTCTCCTGTACTGTATACAGCAGTCGCCGTTCCTTCTGTGAAGGTTTTTATATTTGATGATTGTCATTTTAATTGATCGCATGATCATTTGTGCTTCTGTAAAGTCTGAAAAGATTAAAGCAGCTCACTGAATGTATTTCTGCTGCGAAATAAAACAATCAACTGAAC

Function

GO:

id name namespace
GO:0010604 positive regulation of macromolecule metabolic process biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021536 diencephalon development biological_process
GO:0048468 cell development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0051173 positive regulation of nitrogen compound metabolic process biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0019827 stem cell population maintenance biological_process
GO:0048522 positive regulation of cellular process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0002065 columnar/cuboidal epithelial cell differentiation biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0009893 positive regulation of metabolic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031325 positive regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0120036 plasma membrane bounded cell projection organization biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0097150 neuronal stem cell population maintenance biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0071698 olfactory placode development biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0061564 axon development biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0030030 cell projection organization biological_process
GO:0048666 neuron development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0048934 peripheral nervous system neuron differentiation biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0007409 axonogenesis biological_process
GO:0060284 regulation of cell development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0007423 sensory organ development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042668 auditory receptor cell fate determination biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0009790 embryo development biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0005838 proteasome regulatory particle cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0008540 proteasome regulatory particle, base subcomplex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0005112 Notch binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0005515 protein binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008684 lncRNA upstream 5570 42035787 ~ 42036989 (+) True XLOC_003688
TCONS_00008424 lncRNA upstream 24432 42014028 ~ 42018127 (+) True XLOC_003687
TCONS_00008423 lncRNA upstream 25246 42014003 ~ 42017313 (+) False XLOC_003687
TCONS_00008683 lncRNA upstream 107940 41933100 ~ 41934619 (+) True XLOC_003684
TCONS_00008422 lncRNA upstream 568818 41459848 ~ 41473741 (+) True XLOC_003679
TCONS_00008427 lncRNA downstream 28383 42098047 ~ 42098291 (+) True XLOC_003691
TCONS_00008428 lncRNA downstream 57751 42127415 ~ 42131907 (+) True XLOC_003692
TCONS_00007156 lncRNA downstream 235425 42305089 ~ 42418374 (+) True XLOC_003693
TCONS_00007166 lncRNA downstream 502578 42572242 ~ 42572982 (+) True XLOC_003700
TCONS_00008429 lncRNA downstream 723914 42793578 ~ 42798751 (+) True XLOC_003705
TCONS_00007155 mRNA upstream 58072 41981959 ~ 41984487 (+) True XLOC_003686
TCONS_00007154 mRNA upstream 82283 41936435 ~ 41960276 (+) True XLOC_003685
TCONS_00007153 mRNA upstream 113053 41858807 ~ 41929506 (+) True XLOC_003683
TCONS_00007152 mRNA upstream 192473 41838036 ~ 41850086 (+) True XLOC_003682
TCONS_00007151 mRNA upstream 342655 41560792 ~ 41699904 (+) True XLOC_003681
TCONS_00007157 mRNA downstream 352707 42422371 ~ 42459902 (+) False XLOC_003694
TCONS_00007158 mRNA downstream 352974 42422638 ~ 42447520 (+) False XLOC_003694
TCONS_00007159 mRNA downstream 353009 42422673 ~ 42452486 (+) True XLOC_003694
TCONS_00007160 mRNA downstream 405030 42474694 ~ 42477289 (+) False XLOC_003695
TCONS_00007161 mRNA downstream 405052 42474716 ~ 42477772 (+) True XLOC_003695
TCONS_00007149 other upstream 577323 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 884631 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other upstream 884633 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007131 other upstream 1153265 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007127 other upstream 1386688 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007172 other downstream 555707 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007182 other downstream 975162 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007198 other downstream 1955098 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 2255097 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 2255097 44324761 ~ 44334911 (+) False XLOC_003732

Expression Profile

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