RNA id: TCONS_00075213


Basic Information

Item Value
RNA id TCONS_00075213
length 4818
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id XLOC_037434
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 49749336 ~ 49754453 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtagaggtaATGCTTGACAAatgatgaattcactagatgctaatgcttagtaaatgattcctagtatgtagttattataaagtgttaccacattttTTAGCACACCCAGGTGTTTCATTTTAACATTTGGCTTCAAATGTATtatgttaaaacaattaaattgtatttattgatgGATGATGGTTTGGTTTAAAAACGTGCAAATGCGAAGTGACGCTGACCCATAGTATGAAGGCAACACATTAAAATAAGAATAGCACTCCCTTGAGGTTTGTTACCGCCATAGCagatatttaaagggacagttcactcaagaCATCAAAACTGTGATTTGCTCAGCTCAATGTCATTCAAAGCCTGTGACGTTCTTTCTAATATGGGATATAATAGAAGGTATTTTTTAAACTAACAAACACTGAAAAGATTCTTCTTGAAAACGTCGGGAAGCATTTGCATTTACCTACTGGAACAAAAGTATATTCCTGGCCTTAGGCTCGTGCAATGTTTCTTGTAATTTCAAAAGTTCTAGTTTTGAGCAGAAATGTGGATAGAACTTTTCTATGTATCTGTGTCagtggtgcaaaaaaaaaaaaaaagaaaactgaaaaaagaTAGTTGCTGTTAGTGTTCTGAAGTAAGTGTATATCTAAATGTTTGATAAaagcatgttttatttttgtttgttttttttagctcTCATTGCTGGTTTATGGTTTTGTAAGAGTTTGATGTActgtaaaaagagaaaataatactGTTGCGTTTTCGTACACATTCTTCATGCTTCTAAAGAGTTGGTGAAAGCATGAAAACGGCTCTTAAAATGTGTGCTGTTCATTTGCCTTTGCTTACAAAACCAAAACCATGATATTTAAGTTGTGAACACGATACATTTCCTCAATATGATTGCACTTTTTTCCATTGGCTGAATTGTAACCAATCGTTACCTGAGCACTGAGGGGGGGCGGGGCTACCTGGTACCGTGCCATGACTATGGCTGTGTTCGGAATGGAATACTTGCATACTACTTAGTGAATACTGGATAGTATGCACTCTAGGTACTACTTAAATACCTCTTTGATATTTGGCAGTGGAAACAGTCGCTCAAATTACTCAGATGCACTGCACTTTTGGATACAGTATAgaaacacatacactacctgacaaaagtcttgtcgttttTAGagcaacttgacttctagttgatcattgggaaaagtggcagaaggtggatttttctgatgaatcatctgttgatctgcatcccaatcatcacaaacactgtagaagaCCTACTGGAGCCTGCATGGACGCAAGACTCTCACAGAAACcagtcaagtctggtgaagacaaatcatggtttggggttacattatgTACAGGGGTGTGCGAGAagtctgcaacatcaacagcctgaggtatcgagacatttgtgctgcccattacattacaaaccacaggagagggcaagttcttcagcaggatagcgctccttctcatacttcagcctccacaacaaagctcctgaaagcaaaaaagttcaaagattggccagcccagatACCAgtgtgaacattattgagcatgtcttggataagatggaggaggcattgaagatgaatccaaagactcttgatgaactctgggagtcctgcaaaatcgatttctttgccattccagatgactttattattaagtgatttgagtcagtgcagagatgtatggatgcagtcctccaagctcatgatggagtcagacacaatattcattctgtttccactgcagcatgactttatattctatactggacattacttCTATTGAgtgacttttgtcttagcaaagtcagaccttactgccctaacaaaataattaaaaatcaaggcatgatcatattttattttggtacaataagcgtaatctaggggcctttgcctttcatataagacacttctgatactaaatgatcaactagaagtcaagctattatctgctgttcctaaaacttgcataggcgacttttgtcaggtagtgtagtgcaTACTAGTATGTTAGCATGCTATTCCAAACACAGccttagattattttttataacatatcTTCAAGTTTTTAGGGGATATGTGAAGGTTTTTATTTTCAATGACACTAACAATGAAttaatctatttgtgtttgcTTGAAAAAGACCAATAGGAGACGgaaagttttaacagttttttccaGAAAGATTTAACTTTTTAAGCCAGATGAAAATGCTGTTTGTCTTATGAAACTCTTTGGGATTATACAGGGATTTCTGATGAAATGCACTTTGACTGCGAGTTTAAAAAGTCTAACATACAAAAAAACGAATATTAGCTGTGCGATACTTTAAATGCATCACACAACTGAAAGTATTGTATGGATGGAAACAGATGTTTTCTCAATTTATAGCGAAAGGAATATATTATGGCGTGATGTGAAAACATTCTCTCAATATCCATTTTGAGGGGAACAATTAACCTCATGGTTATTTAATTTTTGAAATGAGCTATGACTGAACAAATCATTCTGTGgagtaatttgttaagtgcaataGTTTATGTGAAACGCTGTATTAATTTAGCATCAGAATTCCTACCATTTTAAAGGGGACGTTCACACAAAAATTCTAATTTGGtcaaatttactcaccctcatcaGTATTTTTCCAAACCTAATGCAGATTTGTTCATTATCAAAATCTTCTTGATAGTTTAAAAGCACAGATGGGGTGTGTAAATAATACCAGGATTATAACTTGTGTGAAATGCAACCTTAAAGCACCGACGAGTTTATAGAAGAAGCCGTTTTTTAGCGCACAAACATTATGATGCATCTGTCAGTTTGTTTCTCCTCTTGATGGAACGAGAGGCATTGTCCAATCGAGAATGTCCCTTAATAAGCTCAAGTCAGGACAATCAAATGCCTTTTACGTCATCAACATTGTAGCGTGAACGAAAGAAGCAGATCTTTAAAGGTGAAGGGTGTCGTTTAGCACTTAATTGATCTTATAAGCTGAATTAAACCATGTATGAACACAAACTCCTCTTTGAGCTGTACTGACATAAGTTATCATTAAAAAAGTGTCATGCAACTAAAAATTCTGAATTATGGAAAGTCAAAACAAGGGATTTAATTGAAGTAAAAACAAGGATTGTGACATCAAAAGTTGAAAGCGACACAATGTTAAAAATTCTGGTCATTTCATGACAGCAGCAACAGAAATTGAGAACAATATTTAAGTTAGCGTTGTTAAGATATTtgcattttgtatttatataaagtGTTCATAAACTTGCAATGTCCCTACaagtaaatcattttaaacctaaaATTTTAAgggaacatttttaaattatgtaaaataaataaataaaaatacagcattGCAACAAACTTTTGCAAGTAATTTTAGTAAATACAATAGAATGAATAGCTATTACACTTATTGATGGaacgttatattaaaattgtcattttatttttaatttgaacttttttttaattaaaggacaagttttgtacaaaaaaaagggcaaaaatgcacaagaaaaaggtctaaattatgctaaaaaataaaacatcgctACAAAATCTTGGTCATTTTAGCAAAACTGTGGTTATACAAATGGAAGGCAATCCACAATAAATAGGAAAGTTTCAATTATGCTAAGAAAATACAACATTGCAACAACATTGTGCAAATCATTTTAGTAAAACTGTGGTTAAACAAATGGAAAGcattgcacaataaataaataaataaacaggtacTTGTTACACAATTATTACTGCCACTATctcaataataacatttttattttattttattttaagcctatttttaaaaaaggacGAGTCTGATTTTGTAATCGCATAAAATGTTCATTAACCTGCAATGTCCCTATCAAACaagttaaacattttaattgaaattgaCAAAAATGTACAAGGAAAGTTAAAACTAtgcttaaaaaaagttattttagtaaaaaaaaaaaactgtggttaTACCAATAGAAAGCAATGCACAACaaagttatttttaataaaggaTGAGTCAGATTTtgtattaatataaaatgtttactaACCTGCAATATCCCTATCAAACAAGTACAAGGAAAGtttaaattatgcaaaaaaaaaaaaaaagaagaagaaataaattgttgcatgttgtatttttttagcttaattTAAACTTTCCTTGTACATTTttgtcaatttagatttttttttatgtttgatagGCAAGTTAATGAAAGTTTTACATTAATACAAAACCAAACTCGtcctttattaaaaaataagcttcaaattaaataaaaaatgtattatagattataaaatgaaaagcaatgtacaataaacaaatagtttttattacaaaaacaatattacaattttaattttagttaaaatgttaagcttatttttaaagtcttttattaaaactgttgttATGCAAATAGAAAGcattacacaataaaaataaataaataaataaataaatcaatagttattacacttttattttagttattactCTAGATATTACTGGCACTTTCTCTATAATACTGTTTTAATTTTAAGGTTATTTTTAATAAAGGACgagtttgatttttttaaacagaattcatctcataattttgactttttgtttcttTCAACTTGTTGATATCACAATAGCTTTACTCTCATCATTTTGACTGTCTCATAATTAAGACTTTTTTATATCAAAATtttagaacaaataaaaaatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0045214 sarcomere organization biological_process
GO:0003008 system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0043292 contractile fiber cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005539 glycosaminoglycan binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075212 lncRNA upstream 871987 48869896 ~ 48877349 (+) True XLOC_037431
TCONS_00073632 lncRNA upstream 890933 48845578 ~ 48858403 (+) True XLOC_037430
TCONS_00075210 lncRNA upstream 993497 48740524 ~ 48755839 (+) False XLOC_037428
TCONS_00075209 lncRNA upstream 993497 48740524 ~ 48755839 (+) False XLOC_037428
TCONS_00073627 lncRNA upstream 993639 48740524 ~ 48755697 (+) False XLOC_037428
TCONS_00075214 lncRNA downstream 114999 49869452 ~ 49885824 (+) False XLOC_037436
TCONS_00073639 lncRNA downstream 115239 49869692 ~ 49871467 (+) False XLOC_037436
TCONS_00073641 lncRNA downstream 115940 49870393 ~ 49871467 (+) False XLOC_037436
TCONS_00073640 lncRNA downstream 115940 49870393 ~ 49871467 (+) True XLOC_037436
TCONS_00075215 lncRNA downstream 145051 49899504 ~ 49903932 (+) True XLOC_037437
TCONS_00073634 mRNA upstream 3912 49659114 ~ 49745424 (+) False XLOC_037433
TCONS_00073636 mRNA upstream 3912 49712868 ~ 49745424 (+) False XLOC_037433
TCONS_00073635 mRNA upstream 3912 49712868 ~ 49745424 (+) False XLOC_037433
TCONS_00073637 mRNA upstream 3912 49727611 ~ 49745424 (+) True XLOC_037433
TCONS_00073633 mRNA upstream 697332 48943471 ~ 49052004 (+) True XLOC_037432
TCONS_00073642 mRNA downstream 246051 50000504 ~ 50007673 (+) False XLOC_037438
TCONS_00073643 mRNA downstream 246083 50000536 ~ 50020516 (+) False XLOC_037438
TCONS_00073644 mRNA downstream 246147 50000600 ~ 50007675 (+) False XLOC_037438
TCONS_00073645 mRNA downstream 247293 50001746 ~ 50032969 (+) False XLOC_037438
TCONS_00073646 mRNA downstream 253103 50007556 ~ 50032945 (+) True XLOC_037438
TCONS_00073602 other upstream 3318203 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 3927751 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 4208743 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 4415231 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 4685067 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073638 other downstream 30867 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 334547 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 1045904 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 2327858 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 5493747 55248200 ~ 55248314 (+) True XLOC_037493

Expression Profile

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