RNA id: TCONS_00073640


Basic Information

Item Value
RNA id TCONS_00073640
length 852
lncRNA type lincRNA
GC content 0.43
exon number 3
gene id XLOC_037436
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 49869452 ~ 49885824 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTTCTATTGTATTTTGCAGATTGGAatggagcacatggaggaaaaaagggaatcacacacctcaATGACTGGGAATTGCTGGTtaggaatttattttaaaaaatcttcaaaGATGAAGCGATGGTGGTTGGTATAGATAGTTAGACaggccttgtctgtgtcaggtttttctttttcaggtaatggagagagagcaggcagaagcgggagactcacaagagcaacGATGGACATTTATATGAAACAGAGCCATTAGGGCTCTGTTGGttctgtctttgtcttttgcaGGCTGGAGTGGAGCAGAATAAGGAGACTCACAAGGGAAACGGTGGAGATATACTTGAAGACCTAGAGCTCAGTAAACAGattggcatggagcatgtggagaaacGGGGAACACACCTCAGTAATGACAAAGTGGAGTGGAGAAACTagggaatcacacacctcagaaATGATCAGAAACTGATGGTCAGGTGTCACCTATCGATTAAAGATGTCCTTCCAATaggaagggggtggaggtgggctTGGGTAGTTAGATAAATGTTTTGTCTGTGGaatcacacctcagcaatgactggaaaTTGATGGTcaggaatttattttaaaaaatcttcaaaGATGAAGCGGTGGTGGTTGGTATAGATAGTTAGACaggccttgtctgtgtcaggtttttctttttcaggtaatggagagagagcaggcagaagcgggagactcacaagagcatcgatGGACATTTATCTGAAACAGAGCCATTAGGGCTCTGTTGGTTCTGTCTTTGACTTTTGCAGGTTGGAGTGGAGTAGAATAAGGAGACTCACAAGGGAAACGGTGGAGATAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194444

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075213 lncRNA upstream 115940 49749336 ~ 49754453 (+) True XLOC_037434
TCONS_00075212 lncRNA upstream 993044 48869896 ~ 48877349 (+) True XLOC_037431
TCONS_00073632 lncRNA upstream 1011990 48845578 ~ 48858403 (+) True XLOC_037430
TCONS_00075209 lncRNA upstream 1114554 48740524 ~ 48755839 (+) False XLOC_037428
TCONS_00075215 lncRNA downstream 28037 49899504 ~ 49903932 (+) True XLOC_037437
TCONS_00075216 lncRNA downstream 167035 50038502 ~ 50044784 (+) False XLOC_037439
TCONS_00074938 lncRNA downstream 491061 50362528 ~ 50485507 (+) False XLOC_037443
TCONS_00075217 lncRNA downstream 491507 50362974 ~ 50368683 (+) True XLOC_037443
TCONS_00075218 lncRNA downstream 831017 50702484 ~ 50703857 (+) False XLOC_037445
TCONS_00073634 mRNA upstream 124969 49659114 ~ 49745424 (+) False XLOC_037433
TCONS_00073636 mRNA upstream 124969 49712868 ~ 49745424 (+) False XLOC_037433
TCONS_00073635 mRNA upstream 124969 49712868 ~ 49745424 (+) False XLOC_037433
TCONS_00073637 mRNA upstream 124969 49727611 ~ 49745424 (+) True XLOC_037433
TCONS_00073633 mRNA upstream 818389 48943471 ~ 49052004 (+) True XLOC_037432
TCONS_00073642 mRNA downstream 129037 50000504 ~ 50007673 (+) False XLOC_037438
TCONS_00073643 mRNA downstream 129069 50000536 ~ 50020516 (+) False XLOC_037438
TCONS_00073644 mRNA downstream 129133 50000600 ~ 50007675 (+) False XLOC_037438
TCONS_00073645 mRNA downstream 130279 50001746 ~ 50032969 (+) False XLOC_037438
TCONS_00073646 mRNA downstream 136089 50007556 ~ 50032945 (+) True XLOC_037438
TCONS_00073638 other upstream 84956 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073602 other upstream 3439260 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 4048808 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 4329800 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 4536288 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073648 other downstream 217533 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 928890 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 2210844 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 5376733 55248200 ~ 55248314 (+) True XLOC_037493
TCONS_00073716 other downstream 6044946 55916413 ~ 55916544 (+) True XLOC_037503

Expression Profile

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