RNA id: TU47186


Basic Information

Item Value
RNA id TU47186
length 1027
lncRNA type sense_over
GC content 0.43
exon number 4
gene id asip1
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 2024224 ~ 2052143 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGATAAAAGGAGgtttggagaaagagagagagagaaccagaGACAAGGGGAATAGagagaggtaaaaaaaaaaagaagaagagaaaaaacacaaaatcagaGGTGAAGTGGGGAAAAAGGGAGCGACTACAGGAAAAGAGAGTTGTGACTTGCGGACAAAAGAGGCAGAGAAATAAAGACGTGTGgcgagaaaagaaaaaggtggGCGAAAAGAGAGGCGCTCACTATAGAAACGAGAAACTGAGAGcgtgacagactgacagacagctgACCCGGAAACCACAGAGAAAGATGAATGCCTTCCTGCTGCTGGGCTGCTTTGTCCTATCTGCGACAGACTACTTCCTTGCCTCTGCCCACATGCTCCCCGACGACAGACTCTCCACCAATAGGGTCGTGGAATATCACACTCTGTCGGCAAGCCTTGAGATAGGCCCACCTCCTGTTGTTATTAGTTGCCGAAATCAGcgaagaagaacaagaaaacaaagaaacaaaaaaagaacaAATTCAGTGTAACGAAgcgccctcctcctcctgctgacTGCATTCCCTTGAGGGGAAGCTGTAAATCTCCAAGCAATGTGTGCTGTGATTTCTGTGCTTTCTGCCAGTGTCGGCTCTTTAGAACTGTCTGTTTCTGTCGAATGGGCAACCCTCGCTGCTAAAGACCAGCTGCAGCCCGGCCCAGCTCCAAGCTGAGGGAGCAAAACTTCATGCTAAAGCAAACCACTTTAAGTGAACACCTTGAGAGGTGAATCACTTCTAGTTCTTGGTTTGTAAGTTTTCCTAAAATTCTCTGCATGAAAGCACTTTATCACAGAGGACTGCCTGACTTTTCTAAAATCTTACAGGGTGTACTACTTATAGGACTTGTGAGACACtcagaaataaaagtttttatATTAGCTTTTTGCATGCATAAATTGGATATGTTTGCTCAATCAATTTTATATATTGCTTTATTTTTacacagaaatacatgaatGCGCAGTATCAAATATTTTATGAAGCCTTTTAAGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47181 lncRNA upstream 105370 1918657 ~ 1918924 (+) True G35316
TU47177 lncRNA upstream 112024 1906068 ~ 1912270 (+) True G35314
TU47124 lncRNA upstream 143919 1845381 ~ 1880375 (+) True G35272
TU47167 lncRNA upstream 145121 1878371 ~ 1879173 (+) True G35304
TU47156 lncRNA upstream 186639 1819772 ~ 1837655 (+) False G35295
TU47189 lncRNA downstream 2399 2054524 ~ 2055867 (+) True G35321
TU47194 lncRNA downstream 27331 2079456 ~ 2079708 (+) True G35325
TU47195 lncRNA downstream 33962 2086087 ~ 2086353 (+) True G35326
TU47197 lncRNA downstream 40534 2092659 ~ 2093001 (+) True G35328
TU47204 lncRNA downstream 102267 2154392 ~ 2272521 (+) False G35332
XM_039798169.1 mRNA upstream 57778 1938583 ~ 1966516 (+) True ahcy
XM_039798510.1 mRNA upstream 97648 1913110 ~ 1926646 (+) True chmp4ba
XM_039799091.1 mRNA upstream 118546 1900274 ~ 1905748 (+) True LOC120558160
XM_039799185.1 mRNA upstream 124812 1884904 ~ 1899482 (+) True LOC120558223
XM_039799186.1 mRNA upstream 124812 1884911 ~ 1899482 (+) False LOC120558223
XM_039799118.1 mRNA downstream 588263 2640388 ~ 2734534 (+) True LOC120558182
XM_039798837.1 mRNA downstream 683734 2735859 ~ 2745280 (+) True LOC120558018
XM_039797683.1 mRNA downstream 758133 2810258 ~ 2818790 (+) True LOC120557397
XM_039797681.1 mRNA downstream 774764 2826889 ~ 2836128 (+) True LOC120557395
XM_039797682.1 mRNA downstream 774765 2826890 ~ 2836128 (+) False LOC120557395
XR_005639076.1 other upstream 67844 1956316 ~ 1956450 (+) True LOC120558247
XR_005639077.1 other upstream 71810 1952350 ~ 1952484 (+) True LOC120558248
XR_005639078.1 other upstream 76867 1947337 ~ 1947427 (+) True LOC120558249
TU47149 other upstream 186639 1811624 ~ 1837655 (+) True G35295
TU47004 other upstream 795600 1224083 ~ 1228694 (+) True G35191
TU47237 other downstream 333490 2385615 ~ 2387974 (+) True LOC120556786
TU47255 other downstream 435869 2487994 ~ 2494591 (+) True G35359
TU47274 other downstream 534050 2586175 ~ 2588162 (+) False G35364
TU47547 other downstream 695095 2747220 ~ 2747772 (+) True G35534
TU47612 other downstream 878799 2930924 ~ 3017125 (+) True G35578

Expression Profile