RNA id: TCONS_00073645


Basic Information

Item Value
RNA id TCONS_00073645
length 1572
RNA type mRNA
GC content 0.46
exon number 13
gene id XLOC_037438
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 50000504 ~ 50032969 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAATTTTTCAGAGCTTGACGGACACTGGCGCCAGACTGACTCTGTGAGGCTGTAAAAGtgggCGGTCTGGAGGAATCAAGCGGACACTTTTAATAGCGCCAGGACATGGGAGACCCTCCATCTGCACCAGCAGGACATCACTGAAGGGCTGTTTTTAATGGAAAACGACAAAAGAGAGAAAAGCGACAAAGCTCAAAAGATGGAAAGTGAAAGGAGTTGTTTGTTGTCCTCACATGATGCTGGGAAAGGTGGAAGTAGTTCGGTGTCCTCGGCCTCATTTAATTTCATCAACTCTATAATAGGAAGCGGGATTATAGGTTTACCATATTCCATGAGTCAGGCCGGACTGCCAATGGGTCTTCTGCTGCTTATTCTGGTTGCCTTCATTACAGATTACTCCATCATTCTTCTGGTCAGAGGAGGAAATCTGTCCGGCACCCACAGTTACCAATCTCTGGTTCGAAGCACATTTGGCCAGATAGGTTACATCATCGTGTCGGTTCTACAGTTTCTTTATCCATTCATTGCAATGATCAGCTACAACATCATCGCAGGAGATACACTTACTAAAGTATTCATGAGAATTCCAGGTGttgGTCCTGGAAACATTCTCACAGAGAGGCATTTTGTAATCGCGATGTCTACTGTTCTGTTCACACTGCCATTGTCTCTCTACAGAGATATAGCAAAGCTGGGAAAGGTGTCTTTATTGTCTATGATTTTGACTTTTGGCATCCTCATGACAGTGGTCGTGAGAGCAGCAACGCTGGGACCGCAGATACCTGCGTCAGATGATGCATGGGTTTTTGCACGGTGGAATGCAATTCAGGCAGTCGCTGTAATGTCTTTCGCTTTAATCTGCCACCATAACAGCTTCATGATCTACGGGTCGCTGCAGGAGCCCACCCTGAGCAGGTGGTCTCTCGTCACACACATATCCGTGGGCTCATCTGTACTGGTCAGTGCTGTCTTTGCTGCAGCAGGTTATGCCACTTTTACTGTTTACACACAAgGTGATATATTTGAGAACTACTGCAGGTCTGATAACTTGGCTACATTCGGCCGGTTCTGCTATGGTGTCAGTATAATCACTACATTTCCTCTGGAGTGCTTTGTAACACGTGAGGTGATCTCCAATGCACTTTTTAAAGGAGGAGAACTCAGTAAATCTTCCCATGTCATCATAACCCTGGTGATCATATCAGCAACAACTGCCATTTCCCTTTCTTACGATTGCCTGGGTATTGTACTGGAACTAAACGGTATTTTGAGCGCAGTACCGCTCATGTTCATCTTCCCCTCTGCCTGTTTCCTGAAGCTCTCGAACGAGCGCTGGTGTCGAGGGGAAAACCTGATTGCCAGCATGATCCTGGTGGCGGGTGTTTTTGTGATGATCATCGGTTTAATCATGATGGCGCTCTTCCCTCAGGACTGTTCACACGGAGCAGAGATGTTCTACTGTAGCGCATCCAACACTTCCAGCACCGCTTCGCCCAGCAATATTCTGCAGTTCATTAACACCACACAGAACACAAGCATCGTCTGACTCTAATTAAATAATGCTTTAATA

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0006865 amino acid transport biological_process
GO:0003333 amino acid transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050417-122 Predicted to enable amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to act upstream of or within amino acid transport and sodium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC38A11 (solute carrier family 38 member 11).

Ensembl:

ensembl_id ENSDART00000058892

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075215 lncRNA upstream 97814 49899504 ~ 49903932 (+) True XLOC_037437
TCONS_00075214 lncRNA upstream 115922 49869452 ~ 49885824 (+) False XLOC_037436
TCONS_00075216 lncRNA downstream 5533 50038502 ~ 50044784 (+) False XLOC_037439
TCONS_00074938 lncRNA downstream 329559 50362528 ~ 50485507 (+) False XLOC_037443
TCONS_00075217 lncRNA downstream 330005 50362974 ~ 50368683 (+) True XLOC_037443
TCONS_00075218 lncRNA downstream 669515 50702484 ~ 50703857 (+) False XLOC_037445
TCONS_00075219 lncRNA downstream 669544 50702513 ~ 50703857 (+) False XLOC_037445
TCONS_00073634 mRNA upstream 256322 49659114 ~ 49745424 (+) False XLOC_037433
TCONS_00073636 mRNA upstream 256322 49712868 ~ 49745424 (+) False XLOC_037433
TCONS_00073635 mRNA upstream 256322 49712868 ~ 49745424 (+) False XLOC_037433
TCONS_00073637 mRNA upstream 256322 49727611 ~ 49745424 (+) True XLOC_037433
TCONS_00073633 mRNA upstream 949742 48943471 ~ 49052004 (+) True XLOC_037432
TCONS_00073647 mRNA downstream 5378 50038347 ~ 50166801 (+) False XLOC_037439
TCONS_00073649 mRNA downstream 77794 50110763 ~ 50171086 (+) True XLOC_037439
TCONS_00073650 mRNA downstream 142397 50175366 ~ 50205757 (+) True XLOC_037441
TCONS_00073651 mRNA downstream 283952 50316921 ~ 50340720 (+) True XLOC_037442
TCONS_00073652 mRNA downstream 566393 50599362 ~ 50752282 (+) False XLOC_037444
TCONS_00073638 other upstream 216309 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073602 other upstream 3570613 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 4180161 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 4461153 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 4667641 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073648 other downstream 56031 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 767388 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 2049342 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 5215231 55248200 ~ 55248314 (+) True XLOC_037493
TCONS_00073716 other downstream 5883444 55916413 ~ 55916544 (+) True XLOC_037503

Expression Profile

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