RNA id: XR_005638891.1


Basic Information

Item Value
RNA id XR_005638891.1
length 1046
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id LOC120556786
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 2385615 ~ 2387974 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGTCTGCTTACGGAGTGATGCTCTCCTTCTATAGAAGCCTATTGTATTAAtacatatctgtgtctgtgaagtTGTTGCTATCTATTTCAGAGAAGAAGTCCTCACCTGGGAGTGCACCTTGGAAGCACGACAATTGGGGGCTCGTCCgggataaaaacaaaaagaggatTCTTCAAATTGGTTGGAAAAGTTCGGTCCAAGGGTGAAAGGTTGCGTTGAACATCTGGCGCCATAAATAAGGTAAGCAGACCATTATTCTGCATTGACTATTCTAAATCAAGGGTGTTCAACGTCTTAGTAACCCACAGACcgctaaaattaattaattaaatacataGTGACAACTTCCATTTTTATAAAAGGTACAGGAAATATGGTATGGTTTATGGAACAAATATGAGGAAATATTTGTGAAAGTCTGAGTTTGGCAACTCCACCCGTGTCCTGACGAGGAGCGGTTTTGGCTGGGTTGAAACACCCGAGAATTGAGacatcttaaaaacaaaaaggttaagTTAAGGTTAATAAGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCAGGTAATTGTAGGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCCCGGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCCCGGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCCTGGGGTAAGTCCTCCACAGTAGAGGTAAGTCCCAAAAGGAGTTGAAGTCTCCTAGGTATGACTGGTGAACGATTGTATTATTGAACCATTTCACACTATTTAGGTGATATGACAAAATAATCCAATGTTCACATGActtgttggttttggtgtcaGACAATTGAGCTAGTTCGATTGTCCAAAGGCTGAGAACCAGGGTATAGCGAGCCATAGATCTCAGCTGGCCAAAATCATAGGGAAACTTGATTTTGGTGTCAAATAGGAATATTACTTTCCTGTTTAAGGGTTGAGAACCAGGGACATAGTGTCCCATAAATCTCAACTGGCCACAatcaaggtttaaaaaaaaaaaaaaaatgaaatgaaaaattgaC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47201 lncRNA upstream 21122 2270422 ~ 2364692 (+) False G35332
TU47202 lncRNA upstream 21621 2279849 ~ 2364193 (+) False G35332
TU47218 lncRNA upstream 63677 2263619 ~ 2322137 (+) False G35336
TU47219 lncRNA upstream 63677 2278240 ~ 2322137 (+) True G35336
TU47204 lncRNA upstream 113293 2154392 ~ 2272521 (+) False G35332
TU47250 lncRNA downstream 69169 2456071 ~ 2488787 (+) True G35355
TU47252 lncRNA downstream 73581 2460483 ~ 2502448 (+) True G35357
TU47253 lncRNA downstream 87174 2474076 ~ 2480941 (+) True G35358
TU47259 lncRNA downstream 94415 2481317 ~ 2590995 (+) False G35361
TU47261 lncRNA downstream 121188 2508090 ~ 2508555 (+) False G35361
XM_039796539.1 mRNA upstream 333671 2024224 ~ 2052143 (+) True asip1
XM_039798169.1 mRNA upstream 419298 1938583 ~ 1966516 (+) True ahcy
XM_039798510.1 mRNA upstream 459168 1913110 ~ 1926646 (+) True chmp4ba
XM_039799091.1 mRNA upstream 480066 1900274 ~ 1905748 (+) True LOC120558160
XM_039799186.1 mRNA upstream 486332 1884911 ~ 1899482 (+) False LOC120558223
XM_039799118.1 mRNA downstream 253486 2640388 ~ 2734534 (+) True LOC120558182
XM_039798837.1 mRNA downstream 348957 2735859 ~ 2745280 (+) True LOC120558018
XM_039797683.1 mRNA downstream 423356 2810258 ~ 2818790 (+) True LOC120557397
XM_039797681.1 mRNA downstream 439987 2826889 ~ 2836128 (+) True LOC120557395
XM_039797682.1 mRNA downstream 439988 2826890 ~ 2836128 (+) False LOC120557395
TU47185 other upstream 333689 2024294 ~ 2052125 (+) False asip1
XR_005639076.1 other upstream 429364 1956316 ~ 1956450 (+) True LOC120558247
XR_005639077.1 other upstream 433330 1952350 ~ 1952484 (+) True LOC120558248
XR_005639078.1 other upstream 438387 1947337 ~ 1947427 (+) True LOC120558249
TU47149 other upstream 548159 1811624 ~ 1837655 (+) True G35295
TU47255 other downstream 101092 2487994 ~ 2494591 (+) True G35359
TU47274 other downstream 199273 2586175 ~ 2588162 (+) False G35364
TU47547 other downstream 360318 2747220 ~ 2747772 (+) True G35534
TU47612 other downstream 544022 2930924 ~ 3017125 (+) True G35578
TU47673 other downstream 894830 3281732 ~ 3358820 (+) False G35618