RNA id: TU47250


Basic Information

Item Value
RNA id TU47250
length 311
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G35355
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 2456071 ~ 2488787 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGACTCTAGATATGAGCAAGAAACATGGAGCAGAGTTTTTGGGGACAAGAcgacatcagtgatggacaatgttagaggaagataccaagtggtgacaaacacatcagctcttCGTGTTTCCATCATCACAACAACAGACTTTACAGACTACAATtgtctggtgatgaaccaacagcagtgtgttagcagtcaCATTGTAGAGTTGAGACTACGGTTGTTTGAGGTAATCTACCgctcagtgggagagaccgctgtgttgccgtgctctatcactgactccactgatgaacAGCCCCCACGTTGGTCTAAA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47207 lncRNA upstream 54261 2270422 ~ 2401810 (+) False G35332
TU47203 lncRNA upstream 54261 2271457 ~ 2401810 (+) True G35332
TU47206 lncRNA upstream 54261 2271457 ~ 2401810 (+) False G35332
XR_005638891.1 lncRNA upstream 69169 2385814 ~ 2386902 (+) False LOC120556786
TU47201 lncRNA upstream 91379 2270422 ~ 2364692 (+) False G35332
TU47261 lncRNA downstream 19303 2508090 ~ 2508555 (+) False G35361
TU47262 lncRNA downstream 19303 2508090 ~ 2590995 (+) False G35361
TU47263 lncRNA downstream 19303 2508090 ~ 2508555 (+) False G35361
TU47264 lncRNA downstream 19303 2508090 ~ 2591348 (+) False G35361
TU47266 lncRNA downstream 19303 2508090 ~ 2508555 (+) False G35361
XM_039796539.1 mRNA upstream 403928 2024224 ~ 2052143 (+) True asip1
XM_039798169.1 mRNA upstream 489555 1938583 ~ 1966516 (+) True ahcy
XM_039798510.1 mRNA upstream 529425 1913110 ~ 1926646 (+) True chmp4ba
XM_039799091.1 mRNA upstream 550323 1900274 ~ 1905748 (+) True LOC120558160
XM_039799186.1 mRNA upstream 556589 1884911 ~ 1899482 (+) False LOC120558223
XM_039799118.1 mRNA downstream 151601 2640388 ~ 2734534 (+) True LOC120558182
XM_039798837.1 mRNA downstream 247072 2735859 ~ 2745280 (+) True LOC120558018
XM_039797683.1 mRNA downstream 321471 2810258 ~ 2818790 (+) True LOC120557397
XM_039797681.1 mRNA downstream 338102 2826889 ~ 2836128 (+) True LOC120557395
XM_039797682.1 mRNA downstream 338103 2826890 ~ 2836128 (+) False LOC120557395
TU47237 other upstream 68097 2385615 ~ 2387974 (+) True LOC120556786
TU47185 other upstream 403946 2024294 ~ 2052125 (+) False asip1
XR_005639076.1 other upstream 499621 1956316 ~ 1956450 (+) True LOC120558247
XR_005639077.1 other upstream 503587 1952350 ~ 1952484 (+) True LOC120558248
XR_005639078.1 other upstream 508644 1947337 ~ 1947427 (+) True LOC120558249
TU47274 other downstream 97388 2586175 ~ 2588162 (+) False G35364
TU47547 other downstream 258433 2747220 ~ 2747772 (+) True G35534
TU47612 other downstream 442137 2930924 ~ 3017125 (+) True G35578
TU47673 other downstream 792945 3281732 ~ 3358820 (+) False G35618
TU47674 other downstream 792945 3281732 ~ 3358820 (+) False G35618

Expression Profile