RNA id: TU47271


Basic Information

Item Value
RNA id TU47271
length 544
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G35363
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 2577634 ~ 2609516 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttcattacAAGAATtgacttcattcattcattcagacaCAGTCGAAGTCTTTACATGTTCTGTTGATCACTTAGTGCATAACACAACAGGGAACCACTGCAATCTGTTCAGAGTGGGTGGACTGATGGacatccagtggtgtagtctacatgaTGTGCAGGTATGCGCCCACATATACCCACCAGGAGAGGTCAAGGATTTCCATATACACAAGGATACGTTATGTTTGGGTCAAATATTCACCCCGTCTGTGTTGCGGTCATTCTCTGCGCAAAGATGAAATGAACTAATGTGAATCACTAAAGTAGATATATGAAATGAAAGCCAACTCAATCTACAATCTCATTATTTTCCTGCAAGCCTGGCCGCTGAAGCTACTGCAGCCCTGGACGATCTGCAGAAATAAAAAgtctgatttatgcttctgtggaggctccacgcacagctttctccgtagcctaCGTTAGTGGTCTGATGTCGATACTGGTGAGCTGGTGTGAGCGTTGAGCcggtgtgtgtgtgtgtgtggtagagagagtgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47283 lncRNA upstream 34427 2522740 ~ 2543207 (+) True G35371
TU47284 lncRNA upstream 34427 2522740 ~ 2543207 (+) False G35371
TU47261 lncRNA upstream 69079 2508090 ~ 2508555 (+) False G35361
TU47263 lncRNA upstream 69079 2508090 ~ 2508555 (+) False G35361
TU47266 lncRNA upstream 69079 2508090 ~ 2508555 (+) False G35361
TU47291 lncRNA downstream 12359 2621875 ~ 2622740 (+) False G35374
TU47292 lncRNA downstream 12359 2621875 ~ 2622740 (+) True G35374
TU47294 lncRNA downstream 12359 2621875 ~ 2622740 (+) False G35374
TU47295 lncRNA downstream 12359 2621875 ~ 2622740 (+) False G35374
TU47296 lncRNA downstream 12359 2621875 ~ 2622740 (+) False G35374
XM_039796539.1 mRNA upstream 525491 2024224 ~ 2052143 (+) True asip1
XM_039798169.1 mRNA upstream 611118 1938583 ~ 1966516 (+) True ahcy
XM_039798510.1 mRNA upstream 650988 1913110 ~ 1926646 (+) True chmp4ba
XM_039799091.1 mRNA upstream 671886 1900274 ~ 1905748 (+) True LOC120558160
XM_039799186.1 mRNA upstream 678152 1884911 ~ 1899482 (+) False LOC120558223
XM_039799118.1 mRNA downstream 30872 2640388 ~ 2734534 (+) True LOC120558182
XM_039798837.1 mRNA downstream 126343 2735859 ~ 2745280 (+) True LOC120558018
XM_039797683.1 mRNA downstream 200742 2810258 ~ 2818790 (+) True LOC120557397
XM_039797681.1 mRNA downstream 217373 2826889 ~ 2836128 (+) True LOC120557395
XM_039797682.1 mRNA downstream 217374 2826890 ~ 2836128 (+) False LOC120557395
TU47255 other upstream 83043 2487994 ~ 2494591 (+) True G35359
TU47237 other upstream 189660 2385615 ~ 2387974 (+) True LOC120556786
TU47185 other upstream 525509 2024294 ~ 2052125 (+) False asip1
XR_005639076.1 other upstream 621184 1956316 ~ 1956450 (+) True LOC120558247
XR_005639077.1 other upstream 625150 1952350 ~ 1952484 (+) True LOC120558248
TU47547 other downstream 137704 2747220 ~ 2747772 (+) True G35534
TU47612 other downstream 321408 2930924 ~ 3017125 (+) True G35578
TU47673 other downstream 672216 3281732 ~ 3358820 (+) False G35618
TU47674 other downstream 672216 3281732 ~ 3358820 (+) False G35618
TU47676 other downstream 672216 3281732 ~ 3328507 (+) True G35618

Expression Profile