RNA id: TU47285


Basic Information

Item Value
RNA id TU47285
length 223
lncRNA type sense_over
GC content 0.50
exon number 4
gene id G35372
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 2536528 ~ 2648786 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacagacacacacacacacacacactcagagacacacacacagagacacacacacagagacacacacacacacaaacacacacacacacacacacacacacagagacacacacacacacacacacacacacacacacagagacacacacccacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47291 lncRNA upstream 20575 2621875 ~ 2622740 (+) False G35374
TU47292 lncRNA upstream 20575 2621875 ~ 2622740 (+) True G35374
TU47294 lncRNA upstream 20575 2621875 ~ 2622740 (+) False G35374
TU47295 lncRNA upstream 20575 2621875 ~ 2622740 (+) False G35374
TU47296 lncRNA upstream 20575 2621875 ~ 2622740 (+) False G35374
TU47312 lncRNA downstream 56814 2705600 ~ 2706455 (+) True G35379
TU47313 lncRNA downstream 56814 2705600 ~ 2706455 (+) False G35379
TU47314 lncRNA downstream 71288 2720074 ~ 2720701 (+) True G35380
TU47554 lncRNA downstream 110418 2759204 ~ 2759496 (+) True G35541
TU47559 lncRNA downstream 118021 2766807 ~ 2774590 (+) False G35544
XM_039796539.1 mRNA upstream 591172 2024224 ~ 2052143 (+) True asip1
XM_039798169.1 mRNA upstream 676799 1938583 ~ 1966516 (+) True ahcy
XM_039798510.1 mRNA upstream 716669 1913110 ~ 1926646 (+) True chmp4ba
XM_039799091.1 mRNA upstream 737567 1900274 ~ 1905748 (+) True LOC120558160
XM_039799186.1 mRNA upstream 743833 1884911 ~ 1899482 (+) False LOC120558223
XM_039798837.1 mRNA downstream 87073 2735859 ~ 2745280 (+) True LOC120558018
XM_039797683.1 mRNA downstream 161472 2810258 ~ 2818790 (+) True LOC120557397
XM_039797681.1 mRNA downstream 178103 2826889 ~ 2836128 (+) True LOC120557395
XM_039797682.1 mRNA downstream 178104 2826890 ~ 2836128 (+) False LOC120557395
XM_039798727.1 mRNA downstream 214750 2863536 ~ 2882763 (+) True ccdc51
TU47274 other upstream 55153 2586175 ~ 2588162 (+) False G35364
TU47255 other upstream 148724 2487994 ~ 2494591 (+) True G35359
TU47237 other upstream 255341 2385615 ~ 2387974 (+) True LOC120556786
TU47185 other upstream 591190 2024294 ~ 2052125 (+) False asip1
XR_005639076.1 other upstream 686865 1956316 ~ 1956450 (+) True LOC120558247
TU47547 other downstream 98434 2747220 ~ 2747772 (+) True G35534
TU47612 other downstream 282138 2930924 ~ 3017125 (+) True G35578
TU47673 other downstream 632946 3281732 ~ 3358820 (+) False G35618
TU47674 other downstream 632946 3281732 ~ 3358820 (+) False G35618
TU47676 other downstream 632946 3281732 ~ 3328507 (+) True G35618

Expression Profile