RNA id: TCONS_00075216


Basic Information

Item Value
RNA id TCONS_00075216
length 461
lncRNA type sense_over
GC content 0.54
exon number 2
gene id XLOC_037439
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 50038347 ~ 50171086 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCAAACAAATCCTCTCATTGCATTGCGTAGGGTTTTAGCACATTCGCCGCTTTGTTGAGGCTTTTATAGTCATGTAAATTCGCATTCCTTCGTCTAAATGCGGAGTGTCAACAGTGGATGAATCCCGCGTGAAGATGGCCGATGGGAGGGCGTCCTGTCAGGGCTGGGATATGCGGGGCAGCGACTCTCCCTCTCGGTTAAATGGGAACAGAGGAGCGTCTGTTGACAGGGGCAGGACTCTGGAAAATATGGTGGGAGTTGCAGAATTTTAAGGGGGTAACGGGACAGCTCGGAAACCTGCTGAAGTTTGTGTCGATGATGGTGTTTTGACGTGTTGGCGGGAGCGAGACTGATGACAGCTGACAGCCGCGCCAAACTTCAAAGGCGATCAAGTGCCAGGGATTGCAGAGCCGCTGCAGGGATGGATGGGAATGCGCACAACCGACCGCCTGACCGAAGG

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003785 actin monomer binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075215 lncRNA upstream 134570 49899504 ~ 49903932 (+) True XLOC_037437
TCONS_00075214 lncRNA upstream 152678 49869452 ~ 49885824 (+) False XLOC_037436
TCONS_00073639 lncRNA upstream 167035 49869692 ~ 49871467 (+) False XLOC_037436
TCONS_00073641 lncRNA upstream 167035 49870393 ~ 49871467 (+) False XLOC_037436
TCONS_00073640 lncRNA upstream 167035 49870393 ~ 49871467 (+) True XLOC_037436
TCONS_00074938 lncRNA downstream 317744 50362528 ~ 50485507 (+) False XLOC_037443
TCONS_00075217 lncRNA downstream 318190 50362974 ~ 50368683 (+) True XLOC_037443
TCONS_00075218 lncRNA downstream 657700 50702484 ~ 50703857 (+) False XLOC_037445
TCONS_00075219 lncRNA downstream 657729 50702513 ~ 50703857 (+) False XLOC_037445
TCONS_00075220 lncRNA downstream 657797 50702581 ~ 50703857 (+) True XLOC_037445
TCONS_00073645 mRNA upstream 5533 50001746 ~ 50032969 (+) False XLOC_037438
TCONS_00073646 mRNA upstream 5557 50007556 ~ 50032945 (+) True XLOC_037438
TCONS_00073643 mRNA upstream 17986 50000536 ~ 50020516 (+) False XLOC_037438
TCONS_00073644 mRNA upstream 30827 50000600 ~ 50007675 (+) False XLOC_037438
TCONS_00073642 mRNA upstream 30829 50000504 ~ 50007673 (+) False XLOC_037438
TCONS_00073649 mRNA downstream 65979 50110763 ~ 50171086 (+) True XLOC_037439
TCONS_00073650 mRNA downstream 130582 50175366 ~ 50205757 (+) True XLOC_037441
TCONS_00073651 mRNA downstream 272137 50316921 ~ 50340720 (+) True XLOC_037442
TCONS_00073652 mRNA downstream 554578 50599362 ~ 50752282 (+) False XLOC_037444
TCONS_00073653 mRNA downstream 555571 50600355 ~ 50755669 (+) False XLOC_037444
TCONS_00073638 other upstream 253065 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073602 other upstream 3607369 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 4216917 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 4497909 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 4704397 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073648 other downstream 44216 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 755573 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 2037527 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 5203416 55248200 ~ 55248314 (+) True XLOC_037493
TCONS_00073716 other downstream 5871629 55916413 ~ 55916544 (+) True XLOC_037503

Expression Profile

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