RNA id: TCONS_00073648


Basic Information

Item Value
RNA id TCONS_00073648
length 675
RNA type processed_transcript
GC content 0.35
exon number 2
gene id XLOC_037440
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 50089000 ~ 50090257 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attatgtttagaaatgtgctgaaacaatcttccctccattaaacagaaattggtaaaaaacaaacaaacaggggcgctaataatttaggggggctaataattctgactttaactgtatattaatataatatgtgGCATCCCAGTCAGCCCCTGCTGTGAGTTGATTTGACCCAAGAAGCTGGGTTGATGTGTTTGTGTGGTAGTAGGGTTGCATTGATTAAACTCTTAGCAATTATTACCCAGAAAATAACCAAAGTTTGGGTTACATAGCACTACCCAAAAACTACCcaagactgtaaaaaaataaataaataaataacccccAAAAATTACCCAAATGCCTCAACCCCACATTTGGGTAGAAAGAAATAACCCCggattttttagagtgtagtatgCTTAAATTTTAAATCAATACACCTATATTGTATATCATGTGGACTTTAATGGTTATAGTTACGTCCTTGCTAAGAACAAACAGGGTGCCACTGGGCTATGAATGTGGCCCCTTTTAGTATGCTTTAATTTTAAGTCAATAcatcaatattatatattttgggGATTGTAAGGGTAATAATTCTGTACAATTATAagagaagacgcttcaatcccagtttgtgggcgttaaatcaggtttatattgtacattaataaaacaattatccAAACAGCAGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000161577

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075216 lncRNA upstream 44216 50038502 ~ 50044784 (+) False XLOC_037439
TCONS_00075215 lncRNA upstream 185068 49899504 ~ 49903932 (+) True XLOC_037437
TCONS_00075214 lncRNA upstream 203176 49869452 ~ 49885824 (+) False XLOC_037436
TCONS_00073639 lncRNA upstream 217533 49869692 ~ 49871467 (+) False XLOC_037436
TCONS_00073641 lncRNA upstream 217533 49870393 ~ 49871467 (+) False XLOC_037436
TCONS_00074938 lncRNA downstream 272271 50362528 ~ 50485507 (+) False XLOC_037443
TCONS_00075217 lncRNA downstream 272717 50362974 ~ 50368683 (+) True XLOC_037443
TCONS_00075218 lncRNA downstream 612227 50702484 ~ 50703857 (+) False XLOC_037445
TCONS_00075219 lncRNA downstream 612256 50702513 ~ 50703857 (+) False XLOC_037445
TCONS_00075220 lncRNA downstream 612324 50702581 ~ 50703857 (+) True XLOC_037445
TCONS_00073645 mRNA upstream 56031 50001746 ~ 50032969 (+) False XLOC_037438
TCONS_00073646 mRNA upstream 56055 50007556 ~ 50032945 (+) True XLOC_037438
TCONS_00073643 mRNA upstream 68484 50000536 ~ 50020516 (+) False XLOC_037438
TCONS_00073644 mRNA upstream 81325 50000600 ~ 50007675 (+) False XLOC_037438
TCONS_00073642 mRNA upstream 81327 50000504 ~ 50007673 (+) False XLOC_037438
TCONS_00073649 mRNA downstream 20506 50110763 ~ 50171086 (+) True XLOC_037439
TCONS_00073650 mRNA downstream 85109 50175366 ~ 50205757 (+) True XLOC_037441
TCONS_00073651 mRNA downstream 226664 50316921 ~ 50340720 (+) True XLOC_037442
TCONS_00073652 mRNA downstream 509105 50599362 ~ 50752282 (+) False XLOC_037444
TCONS_00073653 mRNA downstream 510098 50600355 ~ 50755669 (+) False XLOC_037444
TCONS_00073638 other upstream 303563 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073602 other upstream 3657867 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 4267415 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 4548407 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 4754895 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073655 other downstream 710100 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 1992054 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 5157943 55248200 ~ 55248314 (+) True XLOC_037493
TCONS_00073716 other downstream 5826156 55916413 ~ 55916544 (+) True XLOC_037503

Expression Profile

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