RNA id: TCONS_00008425


Basic Information

Item Value
RNA id TCONS_00008425
length 1191
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_003690
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42053251 ~ 42054601 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACTTGAAGATCAGACTTCAGCAGAATCAGCATCAGTCATGGCCACATACATGGACGTGTCTTTCCAGAGCAGCTTCAAGACTCAACATGTTCAACACGCAAGATGCGTTCTCACGTGTTTGGAGAGAAAGTGTGGCAGCAGCTTGGAGAAGCTCAGATGTGCTGTCGGAGAGTATCTTCAGGCCTCAGATCTGCTGGAGAGAGCCGTGTCTTTCCTCACGCTCAGAAGAGTCTTACTGTCTCATGACGGATACTCCAAATATTCCAGAGAAATCCTGCGGCTGTTTCCCGACCATGCAGAGGATGTAGCAGCGTTACTGTCTGAAGAATGAACACCGGATACTGAAACACTCAGACTGAACATCAAGAAGCCTTTAaagaaatgtacagttgaagtcagaataattcgccctcctgtgaaatatttcctaaatgatgtttaacagagcaaggaatttctcacagtatttcctataatattttttcttctggagaaagtcttatttcttttattttggctagaataaaagcagttttaaattttttaaacacaattttaaggtccaaatttttagcccccttaagcaatatttgcttTCTATTATCTACAGTACAAACCcctgttgtacaatgacttgcctaattaacctaattaagcctttaagtgccactttaagctgaatactagtatctgaatatctagtcaaatattatttactgtcattatgactaagataaaataaatcagttattagagatgagttattaaactattatgattagaaatgtgttgaaacatatcttctctctgttaaacagaattatacaggagggctaataactctgtcttcaactgtttataaaacACAGATGCCttaatttgagtttattttcttgcttcaaagaatatttttatacttttttgtttttacaaatgctCAGTTTTATGCATTGTGtgcattattattagcagttgCACTGCCTTATAGCTCTTTTGTTTGTAAATGTGATGCTTTATGCTGATATTTGTTTAATATGCATAAAGAAATTGAAACCAAAACTCCTCTAAATGggagtaaatgtttttttatatcagTATTGTGATTTAACAATGATCCTATTATTCTTAATGAGGATCTCAAGCCATACATCTGGACGACagtccaaaataaaatatgattttatacGAT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:1990399 epithelium regeneration biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0019827 stem cell population maintenance biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0002065 columnar/cuboidal epithelial cell differentiation biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0097150 neuronal stem cell population maintenance biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0043696 dedifferentiation biological_process
GO:0043697 cell dedifferentiation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0061564 axon development biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0048666 neuron development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0048934 peripheral nervous system neuron differentiation biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060284 regulation of cell development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060290 transdifferentiation biological_process
GO:0007420 brain development biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0003310 pancreatic A cell differentiation biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0005901 caveola cellular_component
GO:0005634 nucleus cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0005112 Notch binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008684 lncRNA upstream 16262 42035787 ~ 42036989 (+) True XLOC_003688
TCONS_00008424 lncRNA upstream 35124 42014028 ~ 42018127 (+) True XLOC_003687
TCONS_00008423 lncRNA upstream 35938 42014003 ~ 42017313 (+) False XLOC_003687
TCONS_00008683 lncRNA upstream 118632 41933100 ~ 41934619 (+) True XLOC_003684
TCONS_00008422 lncRNA upstream 579510 41459848 ~ 41473741 (+) True XLOC_003679
TCONS_00008426 lncRNA downstream 3255 42057856 ~ 42069664 (+) True XLOC_003689
TCONS_00008427 lncRNA downstream 43446 42098047 ~ 42098291 (+) True XLOC_003691
TCONS_00008428 lncRNA downstream 72814 42127415 ~ 42131907 (+) True XLOC_003692
TCONS_00007156 lncRNA downstream 250488 42305089 ~ 42418374 (+) True XLOC_003693
TCONS_00007166 lncRNA downstream 517641 42572242 ~ 42572982 (+) True XLOC_003700
TCONS_00007155 mRNA upstream 68764 41981959 ~ 41984487 (+) True XLOC_003686
TCONS_00007154 mRNA upstream 92975 41936435 ~ 41960276 (+) True XLOC_003685
TCONS_00007153 mRNA upstream 123745 41858807 ~ 41929506 (+) True XLOC_003683
TCONS_00007152 mRNA upstream 203165 41838036 ~ 41850086 (+) True XLOC_003682
TCONS_00007151 mRNA upstream 353347 41560792 ~ 41699904 (+) True XLOC_003681
TCONS_00007157 mRNA downstream 367770 42422371 ~ 42459902 (+) False XLOC_003694
TCONS_00007158 mRNA downstream 368037 42422638 ~ 42447520 (+) False XLOC_003694
TCONS_00007159 mRNA downstream 368072 42422673 ~ 42452486 (+) True XLOC_003694
TCONS_00007160 mRNA downstream 420093 42474694 ~ 42477289 (+) False XLOC_003695
TCONS_00007161 mRNA downstream 420115 42474716 ~ 42477772 (+) True XLOC_003695
TCONS_00007149 other upstream 588015 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 895323 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other upstream 895325 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007131 other upstream 1163957 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007127 other upstream 1397380 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007172 other downstream 570770 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007182 other downstream 990225 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007198 other downstream 1970161 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 2270160 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 2270160 44324761 ~ 44334911 (+) False XLOC_003732

Expression Profile

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