RNA id: TU47612


Basic Information

Item Value
RNA id TU47612
length 951
RNA type TUCP
GC content 0.49
exon number 2
gene id G35578
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 2930924 ~ 3017125 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACTCGTTTCTTTACACCTAATTTATGCAAATGTTACAAACACACAATgctcccacacacacaataacaacaactaccacacacacacacagtaaccacacacacaataacagctACCAGAACATGATGTGGGTTAATAATCAGCCACAACCAACCACACTGCTTAGCTACAACAACCTGTCAGTCCCACTGAAactaactctctctctgtctctctctctcgctctctctctcactctgtctctcgctcactctctctgtctgtctgtctgtctgtctctctctctctttctctgtctctctctttctctgtctgtctctctctctgtctccctctctctctctgtctgtctctctctctctttctctgtctctctctttctctgtctgtctctctctctctgtctccctctctctctctgtctgtctgtctgtctgtctctctctctctttctctgtctgtctctctctgtctctctctacctcttctacctctctctctgtctttctctatctatccctctctctctctctctctctccctctctctgtgtctccctgtctctctctctctccctgtctctgtctctctctccctccctctgtctctctttctctctctctctccctctctcggtgtctccctgtctctctctctctccctgtctctctctctctctccctccctctctctctccctccctctctctctctctgtctccctgtctctgtctgtctctctctctccctctctgtgtctctgtctgtctctgtatctctctctctctgtctgtctctctgtgtctctctctctttctgtctctctctctctctccctgtctctctctctctctctgtctgtctctctgtttctctctctctctctgtctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47600 lncRNA upstream 46804 2867927 ~ 2884120 (+) True G35572
TU47566 lncRNA upstream 144585 2783952 ~ 2786339 (+) True G35548
TU47559 lncRNA upstream 156334 2766807 ~ 2774590 (+) False G35544
TU47557 lncRNA upstream 156866 2768526 ~ 2774058 (+) True G35544
TU47554 lncRNA upstream 171428 2759204 ~ 2759496 (+) True G35541
TU47626 lncRNA downstream 3351 3020476 ~ 3078404 (+) True G35589
TU47621 lncRNA downstream 206614 3223739 ~ 3224162 (+) True G35585
TU47677 lncRNA downstream 227106 3244231 ~ 3328507 (+) False G35618
TU47686 lncRNA downstream 256022 3273147 ~ 3273546 (+) True G35627
TU47669 lncRNA downstream 268437 3285562 ~ 3328507 (+) False G35618
XM_039798727.1 mRNA upstream 48161 2863536 ~ 2882763 (+) True ccdc51
XM_039797681.1 mRNA upstream 94796 2826889 ~ 2836128 (+) True LOC120557395
XM_039797682.1 mRNA upstream 94796 2826890 ~ 2836128 (+) False LOC120557395
XM_039797683.1 mRNA upstream 112134 2810258 ~ 2818790 (+) True LOC120557397
XM_039798837.1 mRNA upstream 185644 2735859 ~ 2745280 (+) True LOC120558018
XM_039798535.1 mRNA downstream 436475 3453600 ~ 3589612 (+) True epha8
XM_039799099.1 mRNA downstream 742369 3759494 ~ 3766040 (+) True c4h1orf50
XM_039797012.1 mRNA downstream 790047 3807172 ~ 3830945 (+) True nuf2
XM_039799131.1 mRNA downstream 877180 3894305 ~ 3913220 (+) True cfap92
XM_039798528.1 mRNA downstream 1198399 4215524 ~ 4242500 (+) True hdac11
TU47547 other upstream 183152 2747220 ~ 2747772 (+) True G35534
TU47274 other upstream 342762 2586175 ~ 2588162 (+) False G35364
TU47255 other upstream 436333 2487994 ~ 2494591 (+) True G35359
TU47237 other upstream 542950 2385615 ~ 2387974 (+) True LOC120556786
TU47185 other upstream 878799 2024294 ~ 2052125 (+) False asip1
TU47673 other downstream 264607 3281732 ~ 3358820 (+) False G35618
TU47674 other downstream 264607 3281732 ~ 3358820 (+) False G35618
TU47676 other downstream 264607 3281732 ~ 3328507 (+) True G35618
unassigned_transcript_179 other downstream 265806 3282931 ~ 3283002 (+) True trnae-cuc_2
unassigned_transcript_180 other downstream 268705 3285830 ~ 3285901 (+) True trnae-cuc_3

Expression Profile