RNA id: TU47670


Basic Information

Item Value
RNA id TU47670
length 1143
RNA type TUCP
GC content 0.51
exon number 2
gene id G35618
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 3244231 ~ 3358820 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacacacacacacacacacacacacacacatacgctggctTGAAATGGGTGAAATTGGCAGTCTGGCGCGTAGCAAACACTCAGCGGTGACCCACCACTCTGCCAGGCAAGGTAACACACCTTTAACAGGGCACCAATAGAGTCTGAAACAAGCAGGGTGAACTTTGAACGGTTTtggaggtttttttttgtaactaaAACTACCAGCTGACTACCAGCTGCCCTGTTAAAAACACACGCTCCCGGTTTAAAAACCACAACGTACCAGATAGAGGGTCAAGGCCTCGGCCCTGCGCGTGTTGACTCGGCGTCGCTTTGTAAATACAGCGCTTTAGGAACTGATACTGAGAGGCTCTGAACGCAACGCTCCCAGTACTCGCAGATATCGGTGAAAGTACAatggtaaaaacaaaaaaaagaagtgtgtgGCCAGTCATGTCAGATCACAGATAAtcccagagagaaagagagagagagaaagaaaaagaaaacaaagaagaggTGAATTTCATTTGTTCACATTTAGGACGGATGCCCACTAGCACGGAGCTCTTGGAAAGGTAGAAATGACTGAGATGGGAGGGTGGGTGGGTAAGGCCGAACGTTGGGACTCCTTACATACACCCTATGATCACATGAGCACAATGTCTTGgttggagagggagggaggggaggaggggaaggGAAAGGGGGAGCAAAACAAGGAAAAGAAAGCACACCAAGTCCAAACCATTGAGCCAGGCCACCAGgagaagagacaaaatactcTAAAACACAGAGCAacgaaagaaaaaactaaatctttgagaagagacacagagagagagagagagagaagagagacagagagagagagagaatgggctTCAGAGGGAACCATCTTCTAGTCTTCCCCAGAGGGCGCCTCCTCTTCTGAgccgtcctcctcctcttcgtcttcctcctcctcgtctcctCCCGCGGCCTCCTTTGTCGTCTTGGGGGCAGGGGAGCTCGCTTTCTTCTcggcctcctcctcttcctcctccagggGACTCTCggggtcctcctcctcctcctcctctttgggTGAGCTCTTCTCCAGGGCCTTGGCGCTGGGGCGCCCCTTCCCCTTTCCTTTCATTGGGCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47686 lncRNA upstream 18258 3273147 ~ 3273546 (+) True G35627
TU47621 lncRNA upstream 67642 3223739 ~ 3224162 (+) True G35585
TU47626 lncRNA upstream 213400 3020476 ~ 3078404 (+) True G35589
TU47620 lncRNA upstream 224141 3001003 ~ 3067663 (+) True G35584
TU47840 lncRNA downstream 312412 3640919 ~ 3641407 (+) True G35704
TU47868 lncRNA downstream 342183 3670690 ~ 3677753 (+) True G35718
TU47887 lncRNA downstream 438869 3767376 ~ 3767576 (+) True G35736
TU47888 lncRNA downstream 439345 3767852 ~ 3768388 (+) True G35737
TU47890 lncRNA downstream 444104 3772611 ~ 3829941 (+) True G35739
XM_039798877.1 mRNA upstream 218534 2964127 ~ 3073270 (+) True mtss1
XM_039797837.1 mRNA upstream 342237 2916796 ~ 2949567 (+) True osgn1
XM_039798727.1 mRNA upstream 409041 2863536 ~ 2882763 (+) True ccdc51
XM_039797681.1 mRNA upstream 455676 2826889 ~ 2836128 (+) True LOC120557395
XM_039798535.1 mRNA downstream 125093 3453600 ~ 3589612 (+) True epha8
XM_039799099.1 mRNA downstream 430987 3759494 ~ 3766040 (+) True c4h1orf50
XM_039797012.1 mRNA downstream 478665 3807172 ~ 3830945 (+) True nuf2
XM_039799131.1 mRNA downstream 565798 3894305 ~ 3913220 (+) True cfap92
XM_039798528.1 mRNA downstream 887017 4215524 ~ 4242500 (+) True hdac11
unassigned_transcript_180 other upstream 5903 3285830 ~ 3285901 (+) True trnae-cuc_3
unassigned_transcript_179 other upstream 8802 3282931 ~ 3283002 (+) True trnae-cuc_2
TU47612 other upstream 274679 2930924 ~ 3017125 (+) True G35578
TU47547 other upstream 544032 2747220 ~ 2747772 (+) True G35534
TU47274 other upstream 703642 2586175 ~ 2588162 (+) False G35364
TU47821 other downstream 125286 3453793 ~ 3556578 (+) False epha8
TU47964 other downstream 620327 3948834 ~ 3950128 (+) True G35791
TU48122 other downstream 1159028 4487535 ~ 4558029 (+) False G35921
TU48123 other downstream 1159028 4487535 ~ 4558029 (+) False G35921
TU48126 other downstream 1159028 4487535 ~ 4493441 (+) False G35921

Expression Profile