RNA id: TCONS_00075220


Basic Information

Item Value
RNA id TCONS_00075220
length 611
lncRNA type intronic
GC content 0.50
exon number 2
gene id XLOC_037445
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 50702484 ~ 50703857 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGTGGTGTTAGTCTGTACAGGACAGATGGTGTAGATTGGTGGTGTTTGTCTGTACAGGACAGGTGGTGTAGATTGGTGGTGTTTGTCTGTACGGGACAGGTGGTGTAGATTGGTGGTGTTGGTCTGTACAGGACAGATGGTGTAGATTGGTGGTGTTAGTCTGTATGGGACAGGTGGTGTAGATTGGTGGTGTTGGTCTGTACAGGACAGGTGGTGTAGATTGGTGGTGTTTGTCTGTACAGGACAGGTGGTGTAGATTGGTGGTGTTAGTCTGTACGGGACAGGTGGTGTTGATTGGTGGTGTTAGTCTGTACAGGACAGACGGTGTAGATTGGTGGTGTTAGTCTGTACGGGATAGGTGGTGTTGATTGGTGGTGTTTGTCTATACGGGACAGGCGGTGTAGATTGGTGGTGTTAGTCTGTACAGGACAGGCGGTGTAGATTGGTGGTGTTTGTCTATACGGGACAGGCGGTGTAGATTGGTGGTGTTAGTCTGTACAGGACAGGCGGTGTAGATTGGTGGTGTTTGTCTATACGGGACAGGCGGTGTAGATTGGTGGTGTTAGTCTGTACAGGACAGGCGGTGTAGATTGGTGGTGTTTGTCTATAC

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0010604 positive regulation of macromolecule metabolic process biological_process
GO:0048731 system development biological_process
GO:0051674 localization of cell biological_process
GO:0048732 gland development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0048468 cell development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0036303 lymph vessel morphogenesis biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0022610 biological adhesion biological_process
GO:0072359 circulatory system development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0048518 positive regulation of biological process biological_process
GO:0048522 positive regulation of cellular process biological_process
GO:0016477 cell migration biological_process
GO:0035295 tube development biological_process
GO:0009605 response to external stimulus biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0009893 positive regulation of metabolic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:0031325 positive regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0120036 plasma membrane bounded cell projection organization biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0051240 positive regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048863 stem cell differentiation biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0048870 cell motility biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0001568 blood vessel development biological_process
GO:0048880 sensory system development biological_process
GO:0001570 vasculogenesis biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0040011 locomotion biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0061564 axon development biological_process
GO:0007389 pattern specification process biological_process
GO:0030030 cell projection organization biological_process
GO:0048666 neuron development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0042330 taxis biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0007423 sensory organ development biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0001944 vasculature development biological_process
GO:0051094 positive regulation of developmental process biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0031175 neuron projection development biological_process
GO:0007155 cell adhesion biological_process
GO:0060841 venous blood vessel development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074938 lncRNA upstream 217074 50362528 ~ 50485507 (+) False XLOC_037443
TCONS_00075217 lncRNA upstream 333898 50362974 ~ 50368683 (+) True XLOC_037443
TCONS_00075216 lncRNA upstream 657797 50038502 ~ 50044784 (+) False XLOC_037439
TCONS_00075215 lncRNA upstream 798649 49899504 ~ 49903932 (+) True XLOC_037437
TCONS_00073641 lncRNA upstream 831114 49870393 ~ 49871467 (+) False XLOC_037436
TCONS_00074939 lncRNA downstream 236500 50940357 ~ 50940853 (+) True XLOC_037447
TCONS_00073656 lncRNA downstream 339598 51043455 ~ 51060961 (+) True XLOC_037448
TCONS_00074940 lncRNA downstream 405932 51109789 ~ 51133178 (+) True XLOC_037449
TCONS_00075221 lncRNA downstream 433479 51137336 ~ 51141121 (+) False XLOC_037450
TCONS_00075223 lncRNA downstream 433495 51137352 ~ 51141121 (+) False XLOC_037450
TCONS_00073651 mRNA upstream 361861 50316921 ~ 50340720 (+) True XLOC_037442
TCONS_00073650 mRNA upstream 496824 50175366 ~ 50205757 (+) True XLOC_037441
TCONS_00073649 mRNA upstream 531495 50110763 ~ 50171086 (+) True XLOC_037439
TCONS_00073647 mRNA upstream 535780 50038347 ~ 50166801 (+) False XLOC_037439
TCONS_00073646 mRNA upstream 669636 50007556 ~ 50032945 (+) True XLOC_037438
TCONS_00073654 mRNA downstream 45531 50749388 ~ 50751614 (+) True XLOC_037444
TCONS_00073657 mRNA downstream 443523 51147380 ~ 51217090 (+) False XLOC_037451
TCONS_00073658 mRNA downstream 443907 51147764 ~ 51217396 (+) False XLOC_037451
TCONS_00073659 mRNA downstream 476651 51180508 ~ 51217128 (+) True XLOC_037451
TCONS_00073660 mRNA downstream 521488 51225345 ~ 51261339 (+) True XLOC_037452
TCONS_00073648 other upstream 612324 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073638 other upstream 917144 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073602 other upstream 4271448 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 4880996 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 5161988 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073655 other downstream 96500 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 1378454 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 4544343 55248200 ~ 55248314 (+) True XLOC_037493
TCONS_00073716 other downstream 5212556 55916413 ~ 55916544 (+) True XLOC_037503

Expression Profile

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