RNA id: TU47887


Basic Information

Item Value
RNA id TU47887
length 201
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G35736
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 3767376 ~ 3767576 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcgattgaagaaattcttagtcgactaacactcattcaatcgtatcgactaatcgattagttgatttaatcgacagatctgtaaatctgagtttctccactaagagtcatgcaaaagcaccactttaattcttgtgtttaccagagatgagctcgtacgtttcttggaaataagtccttcagcatgaaaacagcatcagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47868 lncRNA upstream 89623 3670690 ~ 3677753 (+) True G35718
TU47840 lncRNA upstream 125969 3640919 ~ 3641407 (+) True G35704
TU47677 lncRNA upstream 438869 3244231 ~ 3328507 (+) False G35618
TU47669 lncRNA upstream 438869 3285562 ~ 3328507 (+) False G35618
TU47686 lncRNA upstream 493830 3273147 ~ 3273546 (+) True G35627
TU47888 lncRNA downstream 276 3767852 ~ 3768388 (+) True G35737
TU47890 lncRNA downstream 5035 3772611 ~ 3829941 (+) True G35739
TU47892 lncRNA downstream 22428 3790004 ~ 3791973 (+) True G35741
TU48009 lncRNA downstream 601115 4368691 ~ 4369050 (+) True G35833
TU48010 lncRNA downstream 602343 4369919 ~ 4370221 (+) True G35834
XM_039799099.1 mRNA upstream 1336 3759494 ~ 3766040 (+) True c4h1orf50
XM_039798535.1 mRNA upstream 177764 3453600 ~ 3589612 (+) True epha8
XM_039798877.1 mRNA upstream 694106 2964127 ~ 3073270 (+) True mtss1
XM_039797837.1 mRNA upstream 817809 2916796 ~ 2949567 (+) True osgn1
XM_039798727.1 mRNA upstream 884613 2863536 ~ 2882763 (+) True ccdc51
XM_039797012.1 mRNA downstream 39596 3807172 ~ 3830945 (+) True nuf2
XM_039799131.1 mRNA downstream 126729 3894305 ~ 3913220 (+) True cfap92
XM_039798528.1 mRNA downstream 447948 4215524 ~ 4242500 (+) True hdac11
XM_039798525.1 mRNA downstream 447948 4215524 ~ 4242498 (+) False hdac11
XM_039798526.1 mRNA downstream 448629 4216205 ~ 4242499 (+) False hdac11
TU47821 other upstream 210798 3453793 ~ 3556578 (+) False epha8
TU47676 other upstream 438869 3281732 ~ 3328507 (+) True G35618
TU47964 other downstream 181258 3948834 ~ 3950128 (+) True G35791
TU48122 other downstream 719959 4487535 ~ 4558029 (+) False G35921
TU48123 other downstream 719959 4487535 ~ 4558029 (+) False G35921
TU48126 other downstream 719959 4487535 ~ 4493441 (+) False G35921
TU48127 other downstream 719959 4487535 ~ 4493441 (+) False G35921

Expression Profile