RNA id: TU48010


Basic Information

Item Value
RNA id TU48010
length 278
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G35834
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 4369919 ~ 4370221 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTGAACTAGCCAGCTAGCAAACTGCACACGATGGCAGACACTGCTAATATTGTCGACCTGATTTTGGCGaagccatttgaaagtcttccttACGAGGAGAAACTTAGAATTAAACAGCAGGGTTAGATCAACACTTAAGATTGATTTAGTGCAAAAGACAGGGCAAAGTAACAGGTCTGTTCAGCTCTCCTGGTAGGACAGAGTTAGCTGGCTGTGCTGtgacAAAGAAAATACTGCTGGCCATTCCTCTTGATGAAACCTTCCCATggatattat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48009 lncRNA upstream 869 4368691 ~ 4369050 (+) True G35833
TU47890 lncRNA upstream 539978 3772611 ~ 3829941 (+) True G35739
TU47892 lncRNA upstream 577946 3790004 ~ 3791973 (+) True G35741
TU47888 lncRNA upstream 601531 3767852 ~ 3768388 (+) True G35737
TU47887 lncRNA upstream 602343 3767376 ~ 3767576 (+) True G35736
TU48146 lncRNA downstream 235239 4605460 ~ 4610060 (+) True G35925
TU48164 lncRNA downstream 240317 4610538 ~ 4613004 (+) True G35941
TU48165 lncRNA downstream 245672 4615893 ~ 4617397 (+) True G35942
TU48182 lncRNA downstream 320834 4691055 ~ 4694565 (+) True G35958
TU48271 lncRNA downstream 429750 4799971 ~ 4800984 (+) True G36022
XM_039797519.1 mRNA upstream 8276 4272942 ~ 4361643 (+) True fbln2
XM_039797520.1 mRNA upstream 8276 4272942 ~ 4361643 (+) False fbln2
XM_039798526.1 mRNA upstream 127420 4216205 ~ 4242499 (+) False hdac11
XM_039798527.1 mRNA upstream 127420 4216205 ~ 4242499 (+) False hdac11
XM_039798525.1 mRNA upstream 127421 4215524 ~ 4242498 (+) False hdac11
XM_039797521.1 mRNA downstream 7097 4377318 ~ 4386408 (+) True elf3
XM_039799050.1 mRNA downstream 56572 4426793 ~ 4467714 (+) True LOC120558135
XM_039796622.1 mRNA downstream 101943 4472164 ~ 4479342 (+) False optc
XM_039796621.1 mRNA downstream 101944 4472165 ~ 4479342 (+) True optc
XM_039796528.1 mRNA downstream 117381 4487602 ~ 4488595 (+) True LOC120556802
TU47964 other upstream 419791 3948834 ~ 3950128 (+) True G35791
TU47821 other upstream 813341 3453793 ~ 3556578 (+) False epha8
TU47670 other upstream 1041412 3291804 ~ 3328507 (+) False G35618
unassigned_transcript_180 other upstream 1084018 3285830 ~ 3285901 (+) True trnae-cuc_3
unassigned_transcript_179 other upstream 1086917 3282931 ~ 3283002 (+) True trnae-cuc_2
TU48122 other downstream 117314 4487535 ~ 4558029 (+) False G35921
TU48123 other downstream 117314 4487535 ~ 4558029 (+) False G35921
TU48126 other downstream 117314 4487535 ~ 4493441 (+) False G35921
TU48127 other downstream 117314 4487535 ~ 4493441 (+) False G35921
TU48128 other downstream 117314 4487535 ~ 4497880 (+) False G35921

Expression Profile